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Journal Abstract Search

208 related items for PubMed ID: 24702709

  • 1. Evaluating the strength of salt bridges: a comparison of current biomolecular force fields.
    Debiec KT, Gronenborn AM, Chong LT.
    J Phys Chem B; 2014 Jun 19; 118(24):6561-9. PubMed ID: 24702709
    [Abstract] [Full Text] [Related]

  • 2. Free energy of solvated salt bridges: a simulation and experimental study.
    White AD, Keefe AJ, Ella-Menye JR, Nowinski AK, Shao Q, Pfaendtner J, Jiang S.
    J Phys Chem B; 2013 Jun 20; 117(24):7254-9. PubMed ID: 23697872
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  • 3. Influence of Glu/Arg, Asp/Arg, and Glu/Lys Salt Bridges on α-Helical Stability and Folding Kinetics.
    Meuzelaar H, Vreede J, Woutersen S.
    Biophys J; 2016 Jun 07; 110(11):2328-2341. PubMed ID: 27276251
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  • 4. Simple physics-based analytical formulas for the potentials of mean force of the interaction of amino-acid side chains in water. VI. Oppositely charged side chains.
    Makowski M, Liwo A, Scheraga HA.
    J Phys Chem B; 2011 May 19; 115(19):6130-7. PubMed ID: 21500791
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  • 5. The [Lys(-2)-Arg(-1)-des(17-21)]-endothelin-1 peptide retains the specific Arg(-1)-Asp8 salt bridge but reveals discrepancies between NMR data and molecular dynamics simulations.
    Kaas Q, Aumelas A, Kubo S, Chino N, Kobayashi Y, Chiche L.
    Biochemistry; 2002 Sep 17; 41(37):11099-108. PubMed ID: 12220174
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  • 7. Evaluating the strengths of salt bridges in the CutA1 protein using molecular dynamic simulations: a comparison of different force fields.
    Matsuura Y, Joti Y, Bagautdinov B, Yutani K.
    FEBS Open Bio; 2019 Nov 17; 9(11):1939-1956. PubMed ID: 31509647
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  • 9. Simple physics-based analytical formulas for the potentials of mean force of the interaction of amino-acid side chains in water. V. Like-charged side chains.
    Makowski M, Liwo A, Sobolewski E, Scheraga HA.
    J Phys Chem B; 2011 May 19; 115(19):6119-29. PubMed ID: 21500792
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  • 13. How well do force fields capture the strength of salt bridges in proteins?
    Ahmed MC, Papaleo E, Lindorff-Larsen K.
    PeerJ; 2018 May 19; 6():e4967. PubMed ID: 29910983
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  • 14. Assessing the Current State of Amber Force Field Modifications for DNA.
    Galindo-Murillo R, Robertson JC, Zgarbová M, Šponer J, Otyepka M, Jurečka P, Cheatham TE.
    J Chem Theory Comput; 2016 Aug 09; 12(8):4114-27. PubMed ID: 27300587
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  • 15. Evaluating Force Fields for the Computational Prediction of Ionized Arginine and Lysine Side-Chains Partitioning into Lipid Bilayers and Octanol.
    Sun D, Forsman J, Woodward CE.
    J Chem Theory Comput; 2015 Apr 14; 11(4):1775-91. PubMed ID: 26574387
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  • 17. Peptide salt bridge stability: from gas phase via microhydration to bulk water simulations.
    Pluhařová E, Marsalek O, Schmidt B, Jungwirth P.
    J Chem Phys; 2012 Nov 14; 137(18):185101. PubMed ID: 23163393
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  • 18. Role of backbone hydration and salt-bridge formation in stability of alpha-helix in solution.
    Ghosh T, Garde S, García AE.
    Biophys J; 2003 Nov 14; 85(5):3187-93. PubMed ID: 14581218
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  • 19. Comparison of Secondary Structure Formation Using 10 Different Force Fields in Microsecond Molecular Dynamics Simulations.
    Cino EA, Choy WY, Karttunen M.
    J Chem Theory Comput; 2012 Aug 14; 8(8):2725-2740. PubMed ID: 22904695
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