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Journal Abstract Search

141 related items for PubMed ID: 24860165

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  • 23. kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets.
    Fletez-Brant C, Lee D, McCallion AS, Beer MA.
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W544-56. PubMed ID: 23771147
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  • 24. Condition-specific target prediction from motifs and expression.
    Meng G, Vingron M.
    Bioinformatics; 2014 Jun 15; 30(12):1643-50. PubMed ID: 24532727
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  • 26. COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
    Ha N, Polychronidou M, Lohmann I.
    PLoS One; 2012 Jun 15; 7(12):e52055. PubMed ID: 23272209
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  • 27. oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets.
    Kwon AT, Arenillas DJ, Worsley Hunt R, Wasserman WW.
    G3 (Bethesda); 2012 Sep 15; 2(9):987-1002. PubMed ID: 22973536
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  • 28. MEME-LaB: motif analysis in clusters.
    Brown P, Baxter L, Hickman R, Beynon J, Moore JD, Ott S.
    Bioinformatics; 2013 Jul 01; 29(13):1696-7. PubMed ID: 23681125
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  • 30. A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package.
    Levitsky V, Zemlyanskaya E, Oshchepkov D, Podkolodnaya O, Ignatieva E, Grosse I, Mironova V, Merkulova T.
    Nucleic Acids Res; 2019 Dec 02; 47(21):e139. PubMed ID: 31750523
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  • 31. Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions.
    Van Nostrand EL, Kim SK.
    Genome Res; 2013 Jun 02; 23(6):941-53. PubMed ID: 23531767
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  • 37. MotifViz: an analysis and visualization tool for motif discovery.
    Fu Y, Frith MC, Haverty PM, Weng Z.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W420-3. PubMed ID: 15215422
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  • 38. Cistrome Data Browser: integrated search, analysis and visualization of chromatin data.
    Taing L, Dandawate A, L'Yi S, Gehlenborg N, Brown M, Meyer CA.
    Nucleic Acids Res; 2024 Jan 05; 52(D1):D61-D66. PubMed ID: 37971305
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  • 40. TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome.
    Jenjaroenpun P, Kuznetsov VA.
    BMC Genomics; 2009 Dec 03; 10 Suppl 3(Suppl 3):S9. PubMed ID: 19958507
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