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Journal Abstract Search

141 related items for PubMed ID: 24860165

  • 41. Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells.
    Wong KC, Li Y, Peng C.
    Bioinformatics; 2016 Feb 01; 32(3):321-4. PubMed ID: 26411866
    [Abstract] [Full Text] [Related]

  • 42. A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs.
    Seitzer P, Wilbanks EG, Larsen DJ, Facciotti MT.
    BMC Bioinformatics; 2012 Nov 27; 13():317. PubMed ID: 23181585
    [Abstract] [Full Text] [Related]

  • 43. Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape.
    Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.
    Nucleic Acids Res; 2015 Feb 27; 43(4):e27. PubMed ID: 25477382
    [Abstract] [Full Text] [Related]

  • 44. Comprehensive discovery of DNA motifs in 349 human cells and tissues reveals new features of motifs.
    Zheng Y, Li X, Hu H.
    Nucleic Acids Res; 2015 Jan 27; 43(1):74-83. PubMed ID: 25505144
    [Abstract] [Full Text] [Related]

  • 45. A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information.
    Ma X, Kulkarni A, Zhang Z, Xuan Z, Serfling R, Zhang MQ.
    Nucleic Acids Res; 2012 Apr 27; 40(7):e50. PubMed ID: 22228832
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  • 46. Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells.
    Xie D, Cai J, Chia NY, Ng HH, Zhong S.
    Genome Res; 2008 Aug 27; 18(8):1325-35. PubMed ID: 18490265
    [Abstract] [Full Text] [Related]

  • 47. MEME SUITE: tools for motif discovery and searching.
    Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS.
    Nucleic Acids Res; 2009 Jul 27; 37(Web Server issue):W202-8. PubMed ID: 19458158
    [Abstract] [Full Text] [Related]

  • 48. BML: a versatile web server for bipartite motif discovery.
    Vahed M, Vahed M, Garmire LX.
    Brief Bioinform; 2022 Jan 17; 23(1):. PubMed ID: 34974623
    [Abstract] [Full Text] [Related]

  • 49. CoMoDis: composite motif discovery in mammalian genomes.
    Donaldson IJ, Göttgens B.
    Nucleic Acids Res; 2007 Jan 17; 35(1):e1. PubMed ID: 17130158
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  • 50. TFmotifView: a webserver for the visualization of transcription factor motifs in genomic regions.
    Leporcq C, Spill Y, Balaramane D, Toussaint C, Weber M, Bardet AF.
    Nucleic Acids Res; 2020 Jul 02; 48(W1):W208-W217. PubMed ID: 32324215
    [Abstract] [Full Text] [Related]

  • 51. Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment.
    Worsley Hunt R, Mathelier A, Del Peso L, Wasserman WW.
    BMC Genomics; 2014 Jun 13; 15(1):472. PubMed ID: 24927817
    [Abstract] [Full Text] [Related]

  • 52. Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space.
    Karnik R, Beer MA.
    PLoS One; 2015 Jun 13; 10(10):e0140557. PubMed ID: 26465884
    [Abstract] [Full Text] [Related]

  • 53. CEAS: cis-regulatory element annotation system.
    Ji X, Li W, Song J, Wei L, Liu XS.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W551-4. PubMed ID: 16845068
    [Abstract] [Full Text] [Related]

  • 54. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
    Budak G, Srivastava R, Janga SC.
    RNA; 2017 Jun 01; 23(6):836-846. PubMed ID: 28336542
    [Abstract] [Full Text] [Related]

  • 55. YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation.
    Sinha S, Tompa M.
    Nucleic Acids Res; 2003 Jul 01; 31(13):3586-8. PubMed ID: 12824371
    [Abstract] [Full Text] [Related]

  • 56. Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices.
    Oh YM, Kim JK, Choi S, Yoo JY.
    Nucleic Acids Res; 2012 Mar 01; 40(5):e38. PubMed ID: 22187154
    [Abstract] [Full Text] [Related]

  • 57. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
    Mundade R, Ozer HG, Wei H, Prabhu L, Lu T.
    Cell Cycle; 2014 Mar 01; 13(18):2847-52. PubMed ID: 25486472
    [Abstract] [Full Text] [Related]

  • 58. Identification of context-dependent motifs by contrasting ChIP binding data.
    Mason MJ, Plath K, Zhou Q.
    Bioinformatics; 2010 Nov 15; 26(22):2826-32. PubMed ID: 20870645
    [Abstract] [Full Text] [Related]

  • 59. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
    Pavesi G, Mereghetti P, Zambelli F, Stefani M, Mauri G, Pesole G.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W566-70. PubMed ID: 16845071
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  • 60. BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.
    Kähärä J, Lähdesmäki H.
    Bioinformatics; 2015 Sep 01; 31(17):2852-9. PubMed ID: 25957350
    [Abstract] [Full Text] [Related]

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