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Journal Abstract Search

501 related items for PubMed ID: 24927817

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  • 3. Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets.
    Worsley Hunt R, Wasserman WW.
    Genome Biol; 2014 Jul 29; 15(7):412. PubMed ID: 25070602
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  • 4. RSAT::Plants: Motif Discovery in ChIP-Seq Peaks of Plant Genomes.
    Castro-Mondragon JA, Rioualen C, Contreras-Moreira B, van Helden J.
    Methods Mol Biol; 2016 Jul 29; 1482():297-322. PubMed ID: 27557775
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  • 5. Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data.
    Levitsky VG, Kulakovskiy IV, Ershov NI, Oshchepkov DY, Makeev VJ, Hodgman TC, Merkulova TI.
    BMC Genomics; 2014 Jan 29; 15(1):80. PubMed ID: 24472686
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  • 6. MEME-ChIP: motif analysis of large DNA datasets.
    Machanick P, Bailey TL.
    Bioinformatics; 2011 Jun 15; 27(12):1696-7. PubMed ID: 21486936
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  • 7. Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome.
    Kuznetsov VA, Singh O, Jenjaroenpun P.
    BMC Genomics; 2010 Feb 10; 11 Suppl 1(Suppl 1):S12. PubMed ID: 20158869
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  • 12. The next generation of transcription factor binding site prediction.
    Mathelier A, Wasserman WW.
    PLoS Comput Biol; 2013 Feb 10; 9(9):e1003214. PubMed ID: 24039567
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  • 13. A map of direct TF-DNA interactions in the human genome.
    Gheorghe M, Sandve GK, Khan A, Chèneby J, Ballester B, Mathelier A.
    Nucleic Acids Res; 2019 Feb 28; 47(4):e21. PubMed ID: 30517703
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  • 14. An improved ChIP-seq peak detection system for simultaneously identifying post-translational modified transcription factors by combinatorial fusion, using SUMOylation as an example.
    Cheng CY, Chu CH, Hsu HW, Hsu FR, Tang CY, Wang WC, Kung HJ, Chang PC.
    BMC Genomics; 2014 Feb 28; 15 Suppl 1(Suppl 1):S1. PubMed ID: 24564277
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  • 17. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.
    Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, Weng Z.
    Genome Res; 2012 Sep 28; 22(9):1798-812. PubMed ID: 22955990
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  • 18. A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.
    He X, Chen CC, Hong F, Fang F, Sinha S, Ng HH, Zhong S.
    PLoS One; 2009 Dec 01; 4(12):e8155. PubMed ID: 19956545
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  • 20. Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility.
    Chen X, Yu B, Carriero N, Silva C, Bonneau R.
    Nucleic Acids Res; 2017 May 05; 45(8):4315-4329. PubMed ID: 28334916
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