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205 related items for PubMed ID: 25013168

  • 1. Reverse gyrase--recent advances and current mechanistic understanding of positive DNA supercoiling.
    Lulchev P, Klostermeier D.
    Nucleic Acids Res; 2014 Jul; 42(13):8200-13. PubMed ID: 25013168
    [Abstract] [Full Text] [Related]

  • 2. A β-hairpin is a Minimal Latch that Supports Positive Supercoiling by Reverse Gyrase.
    Collin F, Weisslocker-Schaetzel M, Klostermeier D.
    J Mol Biol; 2020 Jul 24; 432(16):4762-4771. PubMed ID: 32592697
    [Abstract] [Full Text] [Related]

  • 3. Reverse gyrase transiently unwinds double-stranded DNA in an ATP-dependent reaction.
    Ganguly A, del Toro Duany Y, Klostermeier D.
    J Mol Biol; 2013 Jan 09; 425(1):32-40. PubMed ID: 23123378
    [Abstract] [Full Text] [Related]

  • 4. Adenosine 5'-O-(3-thio)triphosphate (ATPgammaS) promotes positive supercoiling of DNA by T. maritima reverse gyrase.
    Jungblut SP, Klostermeier D.
    J Mol Biol; 2007 Aug 03; 371(1):197-209. PubMed ID: 17560602
    [Abstract] [Full Text] [Related]

  • 5. Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling.
    Rudolph MG, del Toro Duany Y, Jungblut SP, Ganguly A, Klostermeier D.
    Nucleic Acids Res; 2013 Jan 03; 41(2):1058-70. PubMed ID: 23209025
    [Abstract] [Full Text] [Related]

  • 6. Reverse gyrase, the two domains intimately cooperate to promote positive supercoiling.
    Déclais AC, Marsault J, Confalonieri F, de La Tour CB, Duguet M.
    J Biol Chem; 2000 Jun 30; 275(26):19498-504. PubMed ID: 10748189
    [Abstract] [Full Text] [Related]

  • 7. The latch modulates nucleotide and DNA binding to the helicase-like domain of Thermotoga maritima reverse gyrase and is required for positive DNA supercoiling.
    Ganguly A, Del Toro Duany Y, Rudolph MG, Klostermeier D.
    Nucleic Acids Res; 2011 Mar 30; 39(5):1789-800. PubMed ID: 21051354
    [Abstract] [Full Text] [Related]

  • 8. The conformational flexibility of the helicase-like domain from Thermotoga maritima reverse gyrase is restricted by the topoisomerase domain.
    del Toro Duany Y, Klostermeier D, Rudolph MG.
    Biochemistry; 2011 Jul 05; 50(26):5816-23. PubMed ID: 21627332
    [Abstract] [Full Text] [Related]

  • 9. Nucleotide-driven conformational changes in the reverse gyrase helicase-like domain couple the nucleotide cycle to DNA processing.
    del Toro Duany Y, Klostermeier D.
    Phys Chem Chem Phys; 2011 Jun 07; 13(21):10009-19. PubMed ID: 21350762
    [Abstract] [Full Text] [Related]

  • 10. Differential contributions of the latch in Thermotoga maritima reverse gyrase to the binding of single-stranded DNA before and after ATP hydrolysis.
    Del Toro Duany Y, Ganguly A, Klostermeier D.
    Biol Chem; 2014 Jan 07; 395(1):83-93. PubMed ID: 23959663
    [Abstract] [Full Text] [Related]

  • 11. The mechanism of negative DNA supercoiling: a cascade of DNA-induced conformational changes prepares gyrase for strand passage.
    Gubaev A, Klostermeier D.
    DNA Repair (Amst); 2014 Apr 07; 16():23-34. PubMed ID: 24674625
    [Abstract] [Full Text] [Related]

  • 12. Structure of reverse gyrase with a minimal latch that supports ATP-dependent positive supercoiling without specific interactions with the topoisomerase domain.
    Mhaindarkar VP, Rasche R, Kümmel D, Rudolph MG, Klostermeier D.
    Acta Crystallogr D Struct Biol; 2023 Jun 01; 79(Pt 6):498-507. PubMed ID: 37204816
    [Abstract] [Full Text] [Related]

  • 13. The reverse gyrase helicase-like domain is a nucleotide-dependent switch that is attenuated by the topoisomerase domain.
    del Toro Duany Y, Jungblut SP, Schmidt AS, Klostermeier D.
    Nucleic Acids Res; 2008 Oct 01; 36(18):5882-95. PubMed ID: 18796525
    [Abstract] [Full Text] [Related]

  • 14. Mutational analysis of the helicase-like domain of Thermotoga maritima reverse gyrase.
    de la Tour CB, Amrani L, Cossard R, Neuman KC, Serre MC, Duguet M.
    J Biol Chem; 2008 Oct 10; 283(41):27395-27402. PubMed ID: 18614530
    [Abstract] [Full Text] [Related]

  • 15. Nucleotide- and stoichiometry-dependent DNA supercoiling by reverse gyrase.
    Hsieh TS, Capp C.
    J Biol Chem; 2005 May 27; 280(21):20467-75. PubMed ID: 15788400
    [Abstract] [Full Text] [Related]

  • 16. Reverse gyrase functions as a DNA renaturase: annealing of complementary single-stranded circles and positive supercoiling of a bubble substrate.
    Hsieh TS, Plank JL.
    J Biol Chem; 2006 Mar 03; 281(9):5640-7. PubMed ID: 16407212
    [Abstract] [Full Text] [Related]

  • 17. Functional interaction of reverse gyrase with single-strand binding protein of the archaeon Sulfolobus.
    Napoli A, Valenti A, Salerno V, Nadal M, Garnier F, Rossi M, Ciaramella M.
    Nucleic Acids Res; 2005 Mar 03; 33(2):564-76. PubMed ID: 15673717
    [Abstract] [Full Text] [Related]

  • 18. DNA gyrase with a single catalytic tyrosine can catalyze DNA supercoiling by a nicking-closing mechanism.
    Gubaev A, Weidlich D, Klostermeier D.
    Nucleic Acids Res; 2016 Dec 01; 44(21):10354-10366. PubMed ID: 27557712
    [Abstract] [Full Text] [Related]

  • 19. Investigating the role of the latch in the positive supercoiling mechanism of reverse gyrase.
    Rodríguez AC.
    Biochemistry; 2003 May 27; 42(20):5993-6004. PubMed ID: 12755601
    [Abstract] [Full Text] [Related]

  • 20. Binding and Hydrolysis of a Single ATP Is Sufficient for N-Gate Closure and DNA Supercoiling by Gyrase.
    Hartmann S, Gubaev A, Klostermeier D.
    J Mol Biol; 2017 Nov 24; 429(23):3717-3729. PubMed ID: 29032205
    [Abstract] [Full Text] [Related]

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