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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

190 related items for PubMed ID: 25161231

  • 1. HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks.
    Hashemifar S, Xu J.
    Bioinformatics; 2014 Sep 01; 30(17):i438-44. PubMed ID: 25161231
    [Abstract] [Full Text] [Related]

  • 2. ModuleAlign: module-based global alignment of protein-protein interaction networks.
    Hashemifar S, Ma J, Naveed H, Canzar S, Xu J.
    Bioinformatics; 2016 Sep 01; 32(17):i658-i664. PubMed ID: 27587686
    [Abstract] [Full Text] [Related]

  • 3. LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules.
    Maskey S, Cho YR.
    BMC Genomics; 2019 Dec 24; 20(Suppl 9):964. PubMed ID: 31874635
    [Abstract] [Full Text] [Related]

  • 4. Global alignment of multiple protein interaction networks with application to functional orthology detection.
    Singh R, Xu J, Berger B.
    Proc Natl Acad Sci U S A; 2008 Sep 02; 105(35):12763-8. PubMed ID: 18725631
    [Abstract] [Full Text] [Related]

  • 5. Pairwise alignment of protein interaction networks.
    Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A.
    J Comput Biol; 2006 Mar 02; 13(2):182-99. PubMed ID: 16597234
    [Abstract] [Full Text] [Related]

  • 6. NETAL: a new graph-based method for global alignment of protein-protein interaction networks.
    Neyshabur B, Khadem A, Hashemifar S, Arab SS.
    Bioinformatics; 2013 Jul 01; 29(13):1654-62. PubMed ID: 23696650
    [Abstract] [Full Text] [Related]

  • 7. Global alignment of multiple protein interaction networks.
    Singh R, Xu J, Berger B.
    Pac Symp Biocomput; 2008 Jul 01; ():303-14. PubMed ID: 18229695
    [Abstract] [Full Text] [Related]

  • 8. Global Biological Network Alignment by Using Efficient Memetic Algorithm.
    Maoguo Gong, Zhenglin Peng, Lijia Ma, Jiaxiang Huang.
    IEEE/ACM Trans Comput Biol Bioinform; 2016 Nov 01; 13(6):1117-1129. PubMed ID: 28055895
    [Abstract] [Full Text] [Related]

  • 9. RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications.
    Alkan F, Erten C.
    Bioinformatics; 2017 Feb 15; 33(4):537-544. PubMed ID: 27797764
    [Abstract] [Full Text] [Related]

  • 10. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 11. L-GRAAL: Lagrangian graphlet-based network aligner.
    Malod-Dognin N, Pržulj N.
    Bioinformatics; 2015 Jul 01; 31(13):2182-9. PubMed ID: 25725498
    [Abstract] [Full Text] [Related]

  • 12. Optimizing a global alignment of protein interaction networks.
    Chindelevitch L, Ma CY, Liao CS, Berger B.
    Bioinformatics; 2013 Nov 01; 29(21):2765-73. PubMed ID: 24048352
    [Abstract] [Full Text] [Related]

  • 13. PrimAlign: PageRank-inspired Markovian alignment for large biological networks.
    Kalecky K, Cho YR.
    Bioinformatics; 2018 Jul 01; 34(13):i537-i546. PubMed ID: 29949962
    [Abstract] [Full Text] [Related]

  • 14. SAlign-a structure aware method for global PPI network alignment.
    Ayub U, Haider I, Naveed H.
    BMC Bioinformatics; 2020 Nov 04; 21(1):500. PubMed ID: 33148180
    [Abstract] [Full Text] [Related]

  • 15. GraphCrunch 2: Software tool for network modeling, alignment and clustering.
    Kuchaiev O, Stevanović A, Hayes W, Pržulj N.
    BMC Bioinformatics; 2011 Jan 19; 12():24. PubMed ID: 21244715
    [Abstract] [Full Text] [Related]

  • 16. BioAlign: An Accurate Global PPI Network Alignment Algorithm.
    Ayub U, Naveed H.
    Evol Bioinform Online; 2022 Jan 19; 18():11769343221110658. PubMed ID: 35898232
    [Abstract] [Full Text] [Related]

  • 17. DualAligner: a dual alignment-based strategy to align protein interaction networks.
    Seah BS, Bhowmick SS, Dewey CF.
    Bioinformatics; 2014 Sep 15; 30(18):2619-26. PubMed ID: 24872427
    [Abstract] [Full Text] [Related]

  • 18. A Novel Computational Approach for Global Alignment for Multiple Biological Networks.
    Djeddi WE, Yahia SB, Nguifo EM.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Sep 15; 15(6):2060-2066. PubMed ID: 29994444
    [Abstract] [Full Text] [Related]

  • 19. IsoBase: a database of functionally related proteins across PPI networks.
    Park D, Singh R, Baym M, Liao CS, Berger B.
    Nucleic Acids Res; 2011 Jan 15; 39(Database issue):D295-300. PubMed ID: 21177658
    [Abstract] [Full Text] [Related]

  • 20. ConnectedAlign: a PPI network alignment method for identifying conserved protein complexes across multiple species.
    Gao J, Song B, Hu X, Yan F, Wang J.
    BMC Bioinformatics; 2018 Aug 13; 19(Suppl 9):286. PubMed ID: 30367584
    [Abstract] [Full Text] [Related]

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