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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

180 related items for PubMed ID: 25177485

  • 1. KEGGscape: a Cytoscape app for pathway data integration.
    Nishida K, Ono K, Kanaya S, Takahashi K.
    F1000Res; 2014; 3():144. PubMed ID: 25177485
    [Abstract] [Full Text] [Related]

  • 2. WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization.
    Kutmon M, Lotia S, Evelo CT, Pico AR.
    F1000Res; 2014; 3():152. PubMed ID: 25254103
    [Abstract] [Full Text] [Related]

  • 3. Development and use of a Cytoscape app for GRNCOP2.
    Díaz-Montaña JJ, Díaz-Díaz N, Barranco CD, Ponzoni I.
    Comput Methods Programs Biomed; 2019 Aug; 177():211-218. PubMed ID: 31319950
    [Abstract] [Full Text] [Related]

  • 4. Visualize omics data on networks with Omics Visualizer, a Cytoscape App.
    Legeay M, Doncheva NT, Morris JH, Jensen LJ.
    F1000Res; 2020 Aug; 9():157. PubMed ID: 32399202
    [Abstract] [Full Text] [Related]

  • 5. GNC-app: A new Cytoscape app to rate gene networks biological coherence using gene-gene indirect relationships.
    Díaz-Montaña JJ, Gómez-Vela F, Díaz-Díaz N.
    Biosystems; 2018 Apr; 166():61-65. PubMed ID: 29408296
    [Abstract] [Full Text] [Related]

  • 6. CyTargetLinker app update: A flexible solution for network extension in Cytoscape.
    Kutmon M, Ehrhart F, Willighagen EL, Evelo CT, Coort SL.
    F1000Res; 2018 Apr; 7():. PubMed ID: 31489175
    [Abstract] [Full Text] [Related]

  • 7. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
    Doncheva NT, Morris JH, Gorodkin J, Jensen LJ.
    J Proteome Res; 2019 Feb 01; 18(2):623-632. PubMed ID: 30450911
    [Abstract] [Full Text] [Related]

  • 8. CyKEGGParser: tailoring KEGG pathways to fit into systems biology analysis workflows.
    Nersisyan L, Samsonyan R, Arakelyan A.
    F1000Res; 2014 Feb 01; 3():145. PubMed ID: 25383185
    [Abstract] [Full Text] [Related]

  • 9. setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges.
    Morris JH, Lotia S, Wu A, Doncheva NT, Albrecht M, Pico AR, Ferrin TE.
    F1000Res; 2014 Feb 01; 3():149. PubMed ID: 25352980
    [Abstract] [Full Text] [Related]

  • 10. ReNE: a cytoscape plugin for regulatory network enhancement.
    Politano G, Benso A, Savino A, Di Carlo S.
    PLoS One; 2014 Feb 01; 9(12):e115585. PubMed ID: 25541727
    [Abstract] [Full Text] [Related]

  • 11. Bringing data from curated pathway resources to Cytoscape with OmniPath.
    Ceccarelli F, Turei D, Gabor A, Saez-Rodriguez J.
    Bioinformatics; 2020 Apr 15; 36(8):2632-2633. PubMed ID: 31886476
    [Abstract] [Full Text] [Related]

  • 12. The Cytoscape Automation app article collection.
    Demchak B, Otasek D, Pico AR, Bader GD, Ono K, Settle B, Sage E, Morris JH, Longabaugh W, Lopes C, Kucera M, Treister A, Schwikowski B, Molenaar P, Ideker T.
    F1000Res; 2018 Apr 15; 7():800. PubMed ID: 29983926
    [Abstract] [Full Text] [Related]

  • 13. Cyrface: An interface from Cytoscape to R that provides a user interface to R packages.
    Gonçalves E, Mirlach F, Saez-Rodriguez J.
    F1000Res; 2013 Apr 15; 2():192. PubMed ID: 24715956
    [Abstract] [Full Text] [Related]

  • 14. Protein-Protein Interaction Network Exploration Using Cytoscape.
    Majeed A, Mukhtar S.
    Methods Mol Biol; 2023 Apr 15; 2690():419-427. PubMed ID: 37450163
    [Abstract] [Full Text] [Related]

  • 15. Porting and using PanGIA for Cytoscape 3: challenges and solutions.
    Welker D, Demchak B.
    F1000Res; 2014 Apr 15; 3():150. PubMed ID: 25075307
    [Abstract] [Full Text] [Related]

  • 16. enhancedGraphics: a Cytoscape app for enhanced node graphics.
    Morris JH, Kuchinsky A, Ferrin TE, Pico AR.
    F1000Res; 2014 Apr 15; 3():147. PubMed ID: 25285206
    [Abstract] [Full Text] [Related]

  • 17. Cytoscape app store.
    Lotia S, Montojo J, Dong Y, Bader GD, Pico AR.
    Bioinformatics; 2013 May 15; 29(10):1350-1. PubMed ID: 23595664
    [Abstract] [Full Text] [Related]

  • 18. Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.
    Mustafin ZS, Lashin SA, Matushkin YG, Gunbin KV, Afonnikov DA.
    BMC Bioinformatics; 2017 Jan 27; 18(Suppl 1):1427. PubMed ID: 28466792
    [Abstract] [Full Text] [Related]

  • 19. Cytoscape tools for the web age: D3.js and Cytoscape.js exporters.
    Ono K, Demchak B, Ideker T.
    F1000Res; 2014 Jan 27; 3():143. PubMed ID: 25520778
    [Abstract] [Full Text] [Related]

  • 20. Biological network exploration with Cytoscape 3.
    Su G, Morris JH, Demchak B, Bader GD.
    Curr Protoc Bioinformatics; 2014 Sep 08; 47():8.13.1-24. PubMed ID: 25199793
    [Abstract] [Full Text] [Related]

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