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Journal Abstract Search

1444 related items for PubMed ID: 25218180

  • 1. Binning metagenomic contigs by coverage and composition.
    Alneberg J, Bjarnason BS, de Bruijn I, Schirmer M, Quick J, Ijaz UZ, Lahti L, Loman NJ, Andersson AF, Quince C.
    Nat Methods; 2014 Nov; 11(11):1144-6. PubMed ID: 25218180
    [Abstract] [Full Text] [Related]

  • 2. AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides.
    Darabi A, Sobhani S, Aghdam R, Eslahchi C.
    BMC Bioinformatics; 2024 Jul 16; 25(1):241. PubMed ID: 39014300
    [Abstract] [Full Text] [Related]

  • 3. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
    Lu YY, Chen T, Fuhrman JA, Sun F.
    Bioinformatics; 2017 Mar 15; 33(6):791-798. PubMed ID: 27256312
    [Abstract] [Full Text] [Related]

  • 4. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.
    Mallawaarachchi V, Lin Y.
    J Comput Biol; 2022 Dec 15; 29(12):1357-1376. PubMed ID: 36367700
    [Abstract] [Full Text] [Related]

  • 5. Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.
    Lin HH, Liao YC.
    Sci Rep; 2016 Apr 12; 6():24175. PubMed ID: 27067514
    [Abstract] [Full Text] [Related]

  • 6. METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs.
    Zhang Z, Zhang L.
    BMC Bioinformatics; 2021 Jul 22; 22(Suppl 10):378. PubMed ID: 34294039
    [Abstract] [Full Text] [Related]

  • 7. CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision.
    Herath D, Tang SL, Tandon K, Ackland D, Halgamuge SK.
    BMC Bioinformatics; 2017 Dec 28; 18(Suppl 16):571. PubMed ID: 29297295
    [Abstract] [Full Text] [Related]

  • 8. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.
    Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett EW, Faith JJ, Sebra R, Schadt EE, Fang G.
    Nat Biotechnol; 2018 Jan 28; 36(1):61-69. PubMed ID: 29227468
    [Abstract] [Full Text] [Related]

  • 9. ICoVeR - an interactive visualization tool for verification and refinement of metagenomic bins.
    Broeksema B, Calusinska M, McGee F, Winter K, Bongiovanni F, Goux X, Wilmes P, Delfosse P, Ghoniem M.
    BMC Bioinformatics; 2017 May 02; 18(1):233. PubMed ID: 28464793
    [Abstract] [Full Text] [Related]

  • 10. metaFlye: scalable long-read metagenome assembly using repeat graphs.
    Kolmogorov M, Bickhart DM, Behsaz B, Gurevich A, Rayko M, Shin SB, Kuhn K, Yuan J, Polevikov E, Smith TPL, Pevzner PA.
    Nat Methods; 2020 Nov 02; 17(11):1103-1110. PubMed ID: 33020656
    [Abstract] [Full Text] [Related]

  • 11. Evaluating de Novo Assembly and Binning Strategies for Time Series Drinking Water Metagenomes.
    Vosloo S, Huo L, Anderson CL, Dai Z, Sevillano M, Pinto A.
    Microbiol Spectr; 2021 Dec 22; 9(3):e0143421. PubMed ID: 34730411
    [Abstract] [Full Text] [Related]

  • 12. MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage.
    Qian J, Comin M.
    BMC Bioinformatics; 2019 Nov 22; 20(Suppl 9):367. PubMed ID: 31757198
    [Abstract] [Full Text] [Related]

  • 13. Improved assemblies using a source-agnostic pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of contigs.
    Scholz M, Lo CC, Chain PS.
    Sci Rep; 2014 Oct 01; 4():6480. PubMed ID: 25270300
    [Abstract] [Full Text] [Related]

  • 14. A new metagenome binning method based on gene uniqueness.
    Kang Y, Wan C, Lu S, Fu Z, Chen AK, Lu Z.
    Genes Genomics; 2020 Aug 01; 42(8):883-892. PubMed ID: 32506266
    [Abstract] [Full Text] [Related]

  • 15. Unsupervised Binning of Metagenomic Assembled Contigs Using Improved Fuzzy C-Means Method.
    Liu Y, Hou T, Kang B, Liu F.
    IEEE/ACM Trans Comput Biol Bioinform; 2017 Aug 01; 14(6):1459-1467. PubMed ID: 27295684
    [Abstract] [Full Text] [Related]

  • 16. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
    Papudeshi B, Haggerty JM, Doane M, Morris MM, Walsh K, Beattie DT, Pande D, Zaeri P, Silva GGZ, Thompson F, Edwards RA, Dinsdale EA.
    BMC Genomics; 2017 Nov 28; 18(1):915. PubMed ID: 29183281
    [Abstract] [Full Text] [Related]

  • 17. GraphBin: refined binning of metagenomic contigs using assembly graphs.
    Mallawaarachchi V, Wickramarachchi A, Lin Y.
    Bioinformatics; 2020 Jun 01; 36(11):3307-3313. PubMed ID: 32167528
    [Abstract] [Full Text] [Related]

  • 18. CH-Bin: A convex hull based approach for binning metagenomic contigs.
    Chandrasiri S, Perera T, Dilhara A, Perera I, Mallawaarachchi V.
    Comput Biol Chem; 2022 Oct 01; 100():107734. PubMed ID: 35964419
    [Abstract] [Full Text] [Related]

  • 19. Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota.
    Foutel-Rodier T, Thierry A, Koszul R, Marbouty M.
    Methods Enzymol; 2018 Oct 01; 612():183-195. PubMed ID: 30502941
    [Abstract] [Full Text] [Related]

  • 20. Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.
    Xie G, Chain PS, Lo CC, Liu KL, Gans J, Merritt J, Qi F.
    Mol Oral Microbiol; 2010 Dec 01; 25(6):391-405. PubMed ID: 21040513
    [Abstract] [Full Text] [Related]

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