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Journal Abstract Search

196 related items for PubMed ID: 25220475

  • 1. A new set of atomic radii for accurate estimation of solvation free energy by Poisson-Boltzmann solvent model.
    Yamagishi J, Okimoto N, Morimoto G, Taiji M.
    J Comput Chem; 2014 Nov 05; 35(29):2132-9. PubMed ID: 25220475
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  • 2. Optimized Radii for Poisson-Boltzmann Calculations with the AMBER Force Field.
    Swanson JM, Adcock SA, McCammon JA.
    J Chem Theory Comput; 2005 May 05; 1(3):484-93. PubMed ID: 26641515
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  • 3. Combining the polarizable Drude force field with a continuum electrostatic Poisson-Boltzmann implicit solvation model.
    Aleksandrov A, Lin FY, Roux B, MacKerell AD.
    J Comput Chem; 2018 Aug 15; 39(22):1707-1719. PubMed ID: 29737546
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  • 4. Optimized parameters for continuum solvation calculations with carbohydrates.
    Green DF.
    J Phys Chem B; 2008 Apr 24; 112(16):5238-49. PubMed ID: 18386862
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  • 6. Quantitative analysis of Poisson-Boltzmann implicit solvent in molecular dynamics.
    Wang J, Tan C, Chanco E, Luo R.
    Phys Chem Chem Phys; 2010 Feb 07; 12(5):1194-202. PubMed ID: 20094685
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  • 7. A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics.
    Sun H, Wen J, Zhao Y, Li B, McCammon JA.
    J Chem Phys; 2015 Dec 28; 143(24):243110. PubMed ID: 26723595
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  • 11. Computations of Absolute Solvation Free Energies of Small Molecules Using Explicit and Implicit Solvent Model.
    Shivakumar D, Deng Y, Roux B.
    J Chem Theory Comput; 2009 Apr 14; 5(4):919-30. PubMed ID: 26609601
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  • 13. Accuracy comparison of several common implicit solvent models and their implementations in the context of protein-ligand binding.
    Katkova EV, Onufriev AV, Aguilar B, Sulimov VB.
    J Mol Graph Model; 2017 Mar 14; 72():70-80. PubMed ID: 28064081
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  • 19. Parameterization of the Hamiltonian Dielectric Solvent (HADES) Reaction-Field Method for the Solvation Free Energies of Amino Acid Side-Chain Analogs.
    Zachmann M, Mathias G, Antes I.
    Chemphyschem; 2015 Jun 08; 16(8):1739-49. PubMed ID: 25820235
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  • 20. Differential geometry based solvation model II: Lagrangian formulation.
    Chen Z, Baker NA, Wei GW.
    J Math Biol; 2011 Dec 08; 63(6):1139-200. PubMed ID: 21279359
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