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Journal Abstract Search

232 related items for PubMed ID: 25244936

  • 1. Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy.
    Cui F, Chen L, LoVerso PR, Zhurkin VB.
    BMC Bioinformatics; 2014 Sep 22; 15(1):313. PubMed ID: 25244936
    [Abstract] [Full Text] [Related]

  • 2. nuMap: a web platform for accurate prediction of nucleosome positioning.
    Alharbi BA, Alshammari TH, Felton NL, Zhurkin VB, Cui F.
    Genomics Proteomics Bioinformatics; 2014 Oct 22; 12(5):249-53. PubMed ID: 25220945
    [Abstract] [Full Text] [Related]

  • 3. Prediction of nucleosome positioning in genomes: limits and perspectives of physical and bioinformatic approaches.
    De Santis P, Morosetti S, Scipioni A.
    J Biomol Struct Dyn; 2010 Jun 22; 27(6):747-64. PubMed ID: 20232931
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  • 4. The nucleosome position-encoding WW/SS sequence pattern is depleted in mammalian genes relative to other eukaryotes.
    Wright GM, Cui F.
    Nucleic Acids Res; 2019 Sep 05; 47(15):7942-7954. PubMed ID: 31216031
    [Abstract] [Full Text] [Related]

  • 5. Structure-based analysis of DNA sequence patterns guiding nucleosome positioning in vitro.
    Cui F, Zhurkin VB.
    J Biomol Struct Dyn; 2010 Jun 05; 27(6):821-41. PubMed ID: 20232936
    [Abstract] [Full Text] [Related]

  • 6. Artificial nucleosome positioning sequences tested in yeast minichromosomes: a strong rotational setting is not sufficient to position nucleosomes in vivo.
    Tanaka S, Zatchej M, Thoma F.
    EMBO J; 1992 Mar 05; 11(3):1187-93. PubMed ID: 1547779
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  • 7. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.
    Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF.
    Nature; 2007 Mar 29; 446(7135):572-6. PubMed ID: 17392789
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  • 12. Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions.
    Schep AN, Buenrostro JD, Denny SK, Schwartz K, Sherlock G, Greenleaf WJ.
    Genome Res; 2015 Nov 29; 25(11):1757-70. PubMed ID: 26314830
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  • 18. Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence.
    Dai Z, Dai X, Xiang Q, Feng J, Wang J, Deng Y, He C.
    BMC Genomics; 2009 Jan 10; 10():15. PubMed ID: 19134214
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  • 19. Sequence-dependent nucleosome positioning.
    Chung HR, Vingron M.
    J Mol Biol; 2009 Mar 13; 386(5):1411-22. PubMed ID: 19070622
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