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Journal Abstract Search

691 related items for PubMed ID: 25282642

  • 1. LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.
    Hu J, Reinert K.
    Bioinformatics; 2015 Feb 01; 31(3):363-72. PubMed ID: 25282642
    [Abstract] [Full Text] [Related]

  • 2. NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks.
    Hu J, Kehr B, Reinert K.
    Bioinformatics; 2014 Feb 15; 30(4):540-8. PubMed ID: 24336806
    [Abstract] [Full Text] [Related]

  • 3. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 4. LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules.
    Maskey S, Cho YR.
    BMC Genomics; 2019 Dec 24; 20(Suppl 9):964. PubMed ID: 31874635
    [Abstract] [Full Text] [Related]

  • 5. ModuleAlign: module-based global alignment of protein-protein interaction networks.
    Hashemifar S, Ma J, Naveed H, Canzar S, Xu J.
    Bioinformatics; 2016 Sep 01; 32(17):i658-i664. PubMed ID: 27587686
    [Abstract] [Full Text] [Related]

  • 6. L-GRAAL: Lagrangian graphlet-based network aligner.
    Malod-Dognin N, Pržulj N.
    Bioinformatics; 2015 Jul 01; 31(13):2182-9. PubMed ID: 25725498
    [Abstract] [Full Text] [Related]

  • 7. SPINAL: scalable protein interaction network alignment.
    Aladag AE, Erten C.
    Bioinformatics; 2013 Apr 01; 29(7):917-24. PubMed ID: 23413436
    [Abstract] [Full Text] [Related]

  • 8. NETAL: a new graph-based method for global alignment of protein-protein interaction networks.
    Neyshabur B, Khadem A, Hashemifar S, Arab SS.
    Bioinformatics; 2013 Jul 01; 29(13):1654-62. PubMed ID: 23696650
    [Abstract] [Full Text] [Related]

  • 9. Graemlin: general and robust alignment of multiple large interaction networks.
    Flannick J, Novak A, Srinivasan BS, McAdams HH, Batzoglou S.
    Genome Res; 2006 Sep 01; 16(9):1169-81. PubMed ID: 16899655
    [Abstract] [Full Text] [Related]

  • 10. A novel algorithm for alignment of multiple PPI networks based on simulated annealing.
    Hu J, He J, Li J, Gao Y, Zheng Y, Shang X.
    BMC Genomics; 2019 Dec 27; 20(Suppl 13):932. PubMed ID: 31881842
    [Abstract] [Full Text] [Related]

  • 11. Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization.
    Hashemifar S, Huang Q, Xu J.
    J Comput Biol; 2016 Nov 27; 23(11):903-911. PubMed ID: 27428933
    [Abstract] [Full Text] [Related]

  • 12. Proper evaluation of alignment-free network comparison methods.
    Yaveroğlu ÖN, Milenković T, Pržulj N.
    Bioinformatics; 2015 Aug 15; 31(16):2697-704. PubMed ID: 25810431
    [Abstract] [Full Text] [Related]

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  • 14. CUFID-query: accurate network querying through random walk based network flow estimation.
    Jeong H, Qian X, Yoon BJ.
    BMC Bioinformatics; 2017 Dec 28; 18(Suppl 14):500. PubMed ID: 29297279
    [Abstract] [Full Text] [Related]

  • 15. MAGNA: Maximizing Accuracy in Global Network Alignment.
    Saraph V, Milenković T.
    Bioinformatics; 2014 Oct 15; 30(20):2931-40. PubMed ID: 25015987
    [Abstract] [Full Text] [Related]

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  • 17. A multiobjective memetic algorithm for PPI network alignment.
    Clark C, Kalita J.
    Bioinformatics; 2015 Jun 15; 31(12):1988-98. PubMed ID: 25667548
    [Abstract] [Full Text] [Related]

  • 18. PrimAlign: PageRank-inspired Markovian alignment for large biological networks.
    Kalecky K, Cho YR.
    Bioinformatics; 2018 Jul 01; 34(13):i537-i546. PubMed ID: 29949962
    [Abstract] [Full Text] [Related]

  • 19. Identification of functional modules from conserved ancestral protein-protein interactions.
    Dutkowski J, Tiuryn J.
    Bioinformatics; 2007 Jul 01; 23(13):i149-58. PubMed ID: 17646291
    [Abstract] [Full Text] [Related]

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