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89 related items for PubMed ID: 25388845

  • 1. Conformational Preferences of Modified Nucleoside 5-Taurinomethyluridine, τm(5)U Occur at 'wobble' 34th Position in the Anticodon Loop of tRNA.
    Kamble AS, Kumbhar BV, Sambhare SB, Bavi RS, Sonawane KD.
    Cell Biochem Biophys; 2015 Apr; 71(3):1589-603. PubMed ID: 25388845
    [Abstract] [Full Text] [Related]

  • 2. Conformational preferences of modified nucleoside N(4)-acetylcytidine, ac4C occur at "wobble" 34th position in the anticodon loop of tRNA.
    Kumbhar BV, Kamble AD, Sonawane KD.
    Cell Biochem Biophys; 2013 Jul; 66(3):797-816. PubMed ID: 23408308
    [Abstract] [Full Text] [Related]

  • 3. Structural significance of hypermodified nucleoside 5-carboxymethylaminomethyluridine (cmnm5U) from 'wobble' (34th) position of mitochondrial tRNAs: Molecular modeling and Markov state model studies.
    Kumbhar NM, Gopal JS.
    J Mol Graph Model; 2019 Jan; 86():66-83. PubMed ID: 30336453
    [Abstract] [Full Text] [Related]

  • 4. Structural significance of hypermodified nucleic acid base hydroxywybutine (OHyW) which occur at 37th position in the anticodon loop of yeast tRNA(Phe).
    Kumbhar NM, Kumbhar BV, Sonawane KD.
    J Mol Graph Model; 2012 Sep; 38():174-85. PubMed ID: 23073221
    [Abstract] [Full Text] [Related]

  • 5. Idiosyncratic recognition of UUG/UUA codons by modified nucleoside 5-taurinomethyluridine, τm5U present at 'wobble' position in anticodon loop of tRNALeu: A molecular modeling approach.
    Kamble AS, Fandilolu PM, Sambhare SB, Sonawane KD.
    PLoS One; 2017 Sep; 12(4):e0176756. PubMed ID: 28453549
    [Abstract] [Full Text] [Related]

  • 6. Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding.
    Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki T.
    J Biol Chem; 2008 Jul 04; 283(27):18801-11. PubMed ID: 18456657
    [Abstract] [Full Text] [Related]

  • 7. Conformational preferences and structural analysis of hypermodified nucleoside, peroxywybutosine (o2yW) found at 37th position in anticodon loop of tRNAPhe and its role in modulating UUC codon-anticodon interactions.
    Fandilolu PM, Kamble AS, Sambhare SB, Sonawane KD.
    Gene; 2018 Jan 30; 641():310-325. PubMed ID: 29107006
    [Abstract] [Full Text] [Related]

  • 8. Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.
    Sonawane KD, Kamble AS, Fandilolu PM.
    J Biomol Struct Dyn; 2018 Dec 30; 36(16):4182-4196. PubMed ID: 29243556
    [Abstract] [Full Text] [Related]

  • 9. Structural Significance of Conformational Preferences and Ribose-Ring-Puckering of Hyper Modified Nucleotide 5'-Monophosphate 2-Methylthio Cyclic N6-Threonylcarbamoyladenosine (p-ms2ct6A) Present at 37th Position in Anticodon Loop of tRNALys.
    Dound AS, Fandilolu PM, Sonawane KD.
    Cell Biochem Biophys; 2022 Dec 30; 80(4):665-680. PubMed ID: 35965304
    [Abstract] [Full Text] [Related]

  • 10. Iso-energetic multiple conformations of hypermodified nucleic acid base wybutine (yW) which occur at 37(th) position in anticodon loop of tRNA(Phe).
    Kumbhar NM, Sonawane KD.
    J Mol Graph Model; 2011 Jun 30; 29(7):935-46. PubMed ID: 21530341
    [Abstract] [Full Text] [Related]

  • 11. Chemical synthesis of the 5-taurinomethyl(-2-thio)uridine modified anticodon arm of the human mitochondrial tRNA(Leu(UUR)) and tRNA(Lys).
    Leszczynska G, Leonczak P, Wozniak K, Malkiewicz A.
    RNA; 2014 Jun 30; 20(6):938-47. PubMed ID: 24757169
    [Abstract] [Full Text] [Related]

  • 12. Acquisition of the wobble modification in mitochondrial tRNALeu(CUN) bearing the G12300A mutation suppresses the MELAS molecular defect.
    Kirino Y, Yasukawa T, Marjavaara SK, Jacobs HT, Holt IJ, Watanabe K, Suzuki T.
    Hum Mol Genet; 2006 Mar 15; 15(6):897-904. PubMed ID: 16446307
    [Abstract] [Full Text] [Related]

  • 13. Modified nucleosides in the first positions of the anticodons of tRNA(Leu)4 and tRNA(Leu)5 from Escherichia coli.
    Horie N, Yamaizumi Z, Kuchino Y, Takai K, Goldman E, Miyazawa T, Nishimura S, Yokoyama S.
    Biochemistry; 1999 Jan 05; 38(1):207-17. PubMed ID: 9890900
    [Abstract] [Full Text] [Related]

  • 14. Conformational preferences of hypermodified nucleoside lysidine (k2C) occurring at "wobble" position in anticodon loop of tRNA(Ile).
    Sonawane KD, Tewari R.
    Nucleosides Nucleotides Nucleic Acids; 2008 Oct 05; 27(10):1158-74. PubMed ID: 18788046
    [Abstract] [Full Text] [Related]

  • 15. The influence of hypermodified nucleosides lysidine and t(6)A to recognize the AUA codon instead of AUG: a molecular dynamics simulation study.
    Sonawane KD, Sambhare SB.
    Integr Biol (Camb); 2015 Nov 05; 7(11):1387-95. PubMed ID: 26215455
    [Abstract] [Full Text] [Related]

  • 16. Conformational preferences of the base substituent in hypermodified nucleotide queuosine 5'-monophosphate 'pQ' and protonated variant 'pQH+'.
    Sonavane UB, Sonawane KD, Tewari R.
    J Biomol Struct Dyn; 2002 Dec 05; 20(3):473-85. PubMed ID: 12437386
    [Abstract] [Full Text] [Related]

  • 17. Analysis of action of wobble nucleoside modifications on codon-anticodon pairing within the ribosome.
    Lim VI.
    J Mol Biol; 1994 Jul 01; 240(1):8-19. PubMed ID: 8021943
    [Abstract] [Full Text] [Related]

  • 18. Presence and coding properties of 2'-O-methyl-5-carbamoylmethyluridine (ncm5Um) in the wobble position of the anticodon of tRNA(Leu) (U*AA) from brewer's yeast.
    Glasser AL, el Adlouni C, Keith G, Sochacka E, Malkiewicz A, Santos M, Tuite MF, Desgrès J.
    FEBS Lett; 1992 Dec 21; 314(3):381-5. PubMed ID: 1468572
    [Abstract] [Full Text] [Related]

  • 19. Decoding property of C5 uridine modification at the wobble position of tRNA anticodon.
    Kurata S, Ohtsuki T, Wada T, Kirino Y, Takai K, Saigo K, Watanabe K, Suzuki T.
    Nucleic Acids Res Suppl; 2003 Dec 21; (3):245-6. PubMed ID: 14510472
    [Abstract] [Full Text] [Related]

  • 20. Metal ion stabilization of the U-turn of the A37 N6-dimethylallyl-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Tworowska I, Nikonowicz EP.
    Biochemistry; 2004 Jan 13; 43(1):55-66. PubMed ID: 14705931
    [Abstract] [Full Text] [Related]

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