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Journal Abstract Search

154 related items for PubMed ID: 25405206

  • 21. A Network Hierarchy-Based method for functional module detection in protein-protein interaction networks.
    Liu W, Ma L, Jeon B, Chen L, Chen B.
    J Theor Biol; 2018 Oct 14; 455():26-38. PubMed ID: 29981337
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  • 22. Improving prediction of heterodimeric protein complexes using combination with pairwise kernel.
    Ruan P, Hayashida M, Akutsu T, Vert JP.
    BMC Bioinformatics; 2018 Feb 19; 19(Suppl 1):39. PubMed ID: 29504897
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  • 23. Improving the Detection of Protein Complexes by Predicting Novel Missing Interactome Links in the Protein-Protein Interaction Network.
    Zaki N, Alashwal H.
    Annu Int Conf IEEE Eng Med Biol Soc; 2018 Jul 19; 2018():5041-5044. PubMed ID: 30441473
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  • 24. Improving protein function prediction using domain and protein complexes in PPI networks.
    Peng W, Wang J, Cai J, Chen L, Li M, Wu FX.
    BMC Syst Biol; 2014 Mar 24; 8():35. PubMed ID: 24655481
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  • 25. Deciphering Supramolecular Structures with Protein-Protein Interaction Network Modeling.
    Tsuji T, Yoda T, Shirai T.
    Sci Rep; 2015 Nov 09; 5():16341. PubMed ID: 26549015
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  • 26. United Complex Centrality for Identification of Essential Proteins from PPI Networks.
    Li M, Lu Y, Niu Z, Wu FX.
    IEEE/ACM Trans Comput Biol Bioinform; 2017 Nov 09; 14(2):370-380. PubMed ID: 28368815
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  • 27. Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model.
    Zhang XF, Dai DQ, Li XX.
    IEEE/ACM Trans Comput Biol Bioinform; 2012 Nov 09; 9(3):857-70. PubMed ID: 22291160
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  • 28. Identifying protein complexes based on an edge weight algorithm and core-attachment structure.
    Wang R, Liu G, Wang C.
    BMC Bioinformatics; 2019 Sep 14; 20(1):471. PubMed ID: 31521132
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  • 29. SHOPIN: Semantic Homogeneity Optimization in Protein Interaction Networks.
    Trivodaliev K, Kalajdziski S, Ivanoska I, Stojkoska BR, Kocarev L.
    Adv Protein Chem Struct Biol; 2015 Sep 14; 101():323-49. PubMed ID: 26572982
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  • 30. A Method for Predicting Protein Complexes from Dynamic Weighted Protein-Protein Interaction Networks.
    Liu L, Sun X, Song W, Du C.
    J Comput Biol; 2018 Jun 14; 25(6):586-605. PubMed ID: 29668304
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  • 31. A new computational strategy for identifying essential proteins based on network topological properties and biological information.
    Qin C, Sun Y, Dong Y.
    PLoS One; 2017 Jun 14; 12(7):e0182031. PubMed ID: 28753682
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  • 32. Detection of Protein Complexes Based on Penalized Matrix Decomposition in a Sparse Protein⁻Protein Interaction Network.
    Cao B, Deng S, Qin H, Ding P, Chen S, Li G.
    Molecules; 2018 Jun 15; 23(6):. PubMed ID: 29914123
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  • 33. Identification of human protein complexes from local sub-graphs of protein-protein interaction network based on random forest with topological structure features.
    Li ZC, Lai YH, Chen LL, Zhou X, Dai Z, Zou XY.
    Anal Chim Acta; 2012 Mar 09; 718():32-41. PubMed ID: 22305895
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  • 34. Multi-Dimensional Scaling based grouping of known complexes and intelligent protein complex detection.
    Rehman ZU, Idris A, Khan A.
    Comput Biol Chem; 2018 Jun 09; 74():149-156. PubMed ID: 29609143
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  • 35. Using contrast patterns between true complexes and random subgraphs in PPI networks to predict unknown protein complexes.
    Liu Q, Song J, Li J.
    Sci Rep; 2016 Feb 12; 6():21223. PubMed ID: 26868667
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  • 36. From the static interactome to dynamic protein complexes: Three challenges.
    Yong CH, Wong L.
    J Bioinform Comput Biol; 2015 Apr 12; 13(2):1571001. PubMed ID: 25653145
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  • 37. Network simulation reveals significant contribution of network motifs to the age-dependency of yeast protein-protein interaction networks.
    Liang C, Luo J, Song D.
    Mol Biosyst; 2014 Jul 29; 10(9):2277-88. PubMed ID: 24964354
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  • 38. A core-attachment based method to detect protein complexes in PPI networks.
    Wu M, Li X, Kwoh CK, Ng SK.
    BMC Bioinformatics; 2009 Jun 02; 10():169. PubMed ID: 19486541
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  • 39. Combining SVM and ECOC for Identification of Protein Complexes from Protein Protein Interaction Networks by Integrating Amino Acids' Physical Properties and Complex Topology.
    Faridoon A, Sikandar A, Imran M, Ghouri S, Sikandar M, Sikandar W.
    Interdiscip Sci; 2020 Sep 02; 12(3):264-275. PubMed ID: 32441001
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  • 40. A Sparse Reconstruction Approach for Identifying Gene Regulatory Networks Using Steady-State Experiment Data.
    Zhang W, Zhou T.
    PLoS One; 2015 Sep 02; 10(7):e0130979. PubMed ID: 26207991
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