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Journal Abstract Search

637 related items for PubMed ID: 25474441

  • 1.
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  • 2. EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.
    Picardi E, Mignone F, Pesole G.
    BMC Bioinformatics; 2009 Jun 16; 10 Suppl 6(Suppl 6):S10. PubMed ID: 19534735
    [Abstract] [Full Text] [Related]

  • 3. SplicingCompass: differential splicing detection using RNA-seq data.
    Aschoff M, Hotz-Wagenblatt A, Glatting KH, Fischer M, Eils R, König R.
    Bioinformatics; 2013 May 01; 29(9):1141-8. PubMed ID: 23449093
    [Abstract] [Full Text] [Related]

  • 4. Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing.
    Orabi B, Xie N, McConeghy B, Dong X, Chauve C, Hach F.
    Nucleic Acids Res; 2023 Jan 25; 51(2):e11. PubMed ID: 36478271
    [Abstract] [Full Text] [Related]

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  • 6. Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing.
    Dong L, Jensen RV, De Rienzo A, Gordon GJ, Xu Y, Sugarbaker DJ, Bueno R.
    BMC Med Genet; 2009 Dec 31; 10():149. PubMed ID: 20043850
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  • 9. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV, Furtado A, Mason PJ, Marquardt A, Kasirajan L, Thirugnanasambandam PP, Botha FC, Henry RJ.
    BMC Genomics; 2017 May 22; 18(1):395. PubMed ID: 28532419
    [Abstract] [Full Text] [Related]

  • 10. Global assembly of expressed sequence tags.
    Cheung F.
    Methods Mol Biol; 2012 May 22; 883():193-9. PubMed ID: 22589135
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  • 12. CLASS: constrained transcript assembly of RNA-seq reads.
    Song L, Florea L.
    BMC Bioinformatics; 2013 May 22; 14 Suppl 5(Suppl 5):S14. PubMed ID: 23734605
    [Abstract] [Full Text] [Related]

  • 13. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K, Echchiki A, Roux J, Šikic M.
    Bioinformatics; 2018 Mar 01; 34(5):748-754. PubMed ID: 29069314
    [Abstract] [Full Text] [Related]

  • 14.
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  • 15. PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.
    Gan RC, Chen TW, Wu TH, Huang PJ, Lee CC, Yeh YM, Chiu CH, Huang HD, Tang P.
    BMC Bioinformatics; 2016 Dec 22; 17(Suppl 19):513. PubMed ID: 28155708
    [Abstract] [Full Text] [Related]

  • 16. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
    Zhang G, Sun M, Wang J, Lei M, Li C, Zhao D, Huang J, Li W, Li S, Li J, Yang J, Luo Y, Hu S, Zhang B.
    Plant J; 2019 Jan 22; 97(2):296-305. PubMed ID: 30288819
    [Abstract] [Full Text] [Related]

  • 17. iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences.
    Zheng Y, Zhao L, Gao J, Fei Z.
    BMC Bioinformatics; 2011 Nov 23; 12():453. PubMed ID: 22111509
    [Abstract] [Full Text] [Related]

  • 18. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.
    Xie Y, Wu G, Tang J, Luo R, Patterson J, Liu S, Huang W, He G, Gu S, Li S, Zhou X, Lam TW, Li Y, Xu X, Wong GK, Wang J.
    Bioinformatics; 2014 Jun 15; 30(12):1660-6. PubMed ID: 24532719
    [Abstract] [Full Text] [Related]

  • 19. CLASS2: accurate and efficient splice variant annotation from RNA-seq reads.
    Song L, Sabunciyan S, Florea L.
    Nucleic Acids Res; 2016 Jun 02; 44(10):e98. PubMed ID: 26975657
    [Abstract] [Full Text] [Related]

  • 20. UMARS: Un-MAppable Reads Solution.
    Li SC, Chan WC, Lai CH, Tsai KW, Hsu CN, Jou YS, Chen HC, Chen CH, Lin WC.
    BMC Bioinformatics; 2011 Feb 15; 12 Suppl 1(Suppl 1):S9. PubMed ID: 21342592
    [Abstract] [Full Text] [Related]

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