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Journal Abstract Search

364 related items for PubMed ID: 25488330

  • 1. Structural templates for comparative protein docking.
    Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.
    Proteins; 2015 Sep; 83(9):1563-70. PubMed ID: 25488330
    [Abstract] [Full Text] [Related]

  • 2. Docking by structural similarity at protein-protein interfaces.
    Sinha R, Kundrotas PJ, Vakser IA.
    Proteins; 2010 Nov 15; 78(15):3235-41. PubMed ID: 20715056
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  • 5. Simulated unbound structures for benchmarking of protein docking in the DOCKGROUND resource.
    Kirys T, Ruvinsky AM, Singla D, Tuzikov AV, Kundrotas PJ, Vakser IA.
    BMC Bioinformatics; 2015 Jul 31; 16(1):243. PubMed ID: 26227548
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  • 6. DOCKGROUND resource for studying protein-protein interfaces.
    Douguet D, Chen HC, Tovchigrechko A, Vakser IA.
    Bioinformatics; 2006 Nov 01; 22(21):2612-8. PubMed ID: 16928732
    [Abstract] [Full Text] [Related]

  • 7. Protein docking using case-based reasoning.
    Ghoorah AW, Devignes MD, Smaïl-Tabbone M, Ritchie DW.
    Proteins; 2013 Dec 01; 81(12):2150-8. PubMed ID: 24123156
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  • 9. Dockground resource for protein recognition studies.
    Collins KW, Copeland MM, Kotthoff I, Singh A, Kundrotas PJ, Vakser IA.
    Protein Sci; 2022 Dec 01; 31(12):e4481. PubMed ID: 36281025
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  • 10. Protein models docking benchmark 2.
    Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.
    Proteins; 2015 May 01; 83(5):891-7. PubMed ID: 25712716
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  • 11. Structural quality of unrefined models in protein docking.
    Anishchenko I, Kundrotas PJ, Vakser IA.
    Proteins; 2017 Jan 01; 85(1):39-45. PubMed ID: 27756103
    [Abstract] [Full Text] [Related]

  • 12. Protein models: the Grand Challenge of protein docking.
    Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.
    Proteins; 2014 Feb 01; 82(2):278-87. PubMed ID: 23934791
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  • 13. Global and local structural similarity in protein-protein complexes: implications for template-based docking.
    Kundrotas PJ, Vakser IA.
    Proteins; 2013 Dec 01; 81(12):2137-42. PubMed ID: 23946125
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  • 14. Protein-Protein Docking Benchmark 2.0: an update.
    Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z.
    Proteins; 2005 Aug 01; 60(2):214-6. PubMed ID: 15981264
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  • 15. Advances in template-based protein docking by utilizing interfaces towards completing structural interactome.
    Muratcioglu S, Guven-Maiorov E, Keskin Ö, Gursoy A.
    Curr Opin Struct Biol; 2015 Dec 01; 35():87-92. PubMed ID: 26539658
    [Abstract] [Full Text] [Related]

  • 16. How to choose templates for modeling of protein complexes: Insights from benchmarking template-based docking.
    Chakravarty D, McElfresh GW, Kundrotas PJ, Vakser IA.
    Proteins; 2020 Aug 01; 88(8):1070-1081. PubMed ID: 31994759
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  • 17. Dockground Tool for Development and Benchmarking of Protein Docking Procedures.
    Kundrotas PJ, Kotthoff I, Choi SW, Copeland MM, Vakser IA.
    Methods Mol Biol; 2020 Aug 01; 2165():289-300. PubMed ID: 32621232
    [Abstract] [Full Text] [Related]

  • 18. GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions.
    Kundrotas PJ, Zhu Z, Vakser IA.
    Hum Genomics; 2012 Jul 11; 6(1):7. PubMed ID: 23245398
    [Abstract] [Full Text] [Related]

  • 19. Docking without docking: ISEARCH--prediction of interactions using known interfaces.
    Günther S, May P, Hoppe A, Frömmel C, Preissner R.
    Proteins; 2007 Dec 01; 69(4):839-44. PubMed ID: 17803236
    [Abstract] [Full Text] [Related]

  • 20. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y, Wen Z, Wang X, Huang SY.
    Proteins; 2017 Mar 01; 85(3):497-512. PubMed ID: 28026062
    [Abstract] [Full Text] [Related]

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