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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

89 related items for PubMed ID: 25580224

  • 1. The Cytoscape app article collection.
    Pico AR, Bader GD, Demchak B, Guitart Pla O, Hull T, Longabaugh W, Lopes C, Lotia S, Molenaar P, Montojo J, Morris JH, Ono K, Schwikowski B, Welker D, Ideker T.
    F1000Res; 2014; 3():138. PubMed ID: 25580224
    [Abstract] [Full Text] [Related]

  • 2. The Cytoscape Automation app article collection.
    Demchak B, Otasek D, Pico AR, Bader GD, Ono K, Settle B, Sage E, Morris JH, Longabaugh W, Lopes C, Kucera M, Treister A, Schwikowski B, Molenaar P, Ideker T.
    F1000Res; 2018; 7():800. PubMed ID: 29983926
    [Abstract] [Full Text] [Related]

  • 3. Cytoscape app store.
    Lotia S, Montojo J, Dong Y, Bader GD, Pico AR.
    Bioinformatics; 2013 May 15; 29(10):1350-1. PubMed ID: 23595664
    [Abstract] [Full Text] [Related]

  • 4. Development and use of a Cytoscape app for GRNCOP2.
    Díaz-Montaña JJ, Díaz-Díaz N, Barranco CD, Ponzoni I.
    Comput Methods Programs Biomed; 2019 Aug 15; 177():211-218. PubMed ID: 31319950
    [Abstract] [Full Text] [Related]

  • 5. The Cyni framework for network inference in Cytoscape.
    Guitart-Pla O, Kustagi M, Rügheimer F, Califano A, Schwikowski B.
    Bioinformatics; 2015 May 01; 31(9):1499-501. PubMed ID: 25527096
    [Abstract] [Full Text] [Related]

  • 6. A Cytoscape app for motif enumeration with ISMAGS.
    Van Parys T, Melckenbeeck I, Houbraken M, Audenaert P, Colle D, Pickavet M, Demeester P, Van de Peer Y.
    Bioinformatics; 2017 Feb 01; 33(3):461-463. PubMed ID: 28158465
    [Abstract] [Full Text] [Related]

  • 7. GNC-app: A new Cytoscape app to rate gene networks biological coherence using gene-gene indirect relationships.
    Díaz-Montaña JJ, Gómez-Vela F, Díaz-Díaz N.
    Biosystems; 2018 Apr 01; 166():61-65. PubMed ID: 29408296
    [Abstract] [Full Text] [Related]

  • 8. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization.
    Li M, Yang J, Wu FX, Pan Y, Wang J.
    Bioinformatics; 2018 May 01; 34(9):1597-1599. PubMed ID: 29293938
    [Abstract] [Full Text] [Related]

  • 9. Bringing data from curated pathway resources to Cytoscape with OmniPath.
    Ceccarelli F, Turei D, Gabor A, Saez-Rodriguez J.
    Bioinformatics; 2020 Apr 15; 36(8):2632-2633. PubMed ID: 31886476
    [Abstract] [Full Text] [Related]

  • 10. CoNet app: inference of biological association networks using Cytoscape.
    Faust K, Raes J.
    F1000Res; 2016 Apr 15; 5():1519. PubMed ID: 27853510
    [Abstract] [Full Text] [Related]

  • 11. dot-app: a Graphviz-Cytoscape conversion plug-in.
    Fitts B, Zhang Z, Maher M, Demchak B.
    F1000Res; 2016 Apr 15; 5():2543. PubMed ID: 27853520
    [Abstract] [Full Text] [Related]

  • 12. CyTargetLinker app update: A flexible solution for network extension in Cytoscape.
    Kutmon M, Ehrhart F, Willighagen EL, Evelo CT, Coort SL.
    F1000Res; 2018 Apr 15; 7():. PubMed ID: 31489175
    [Abstract] [Full Text] [Related]

  • 13. cyNeo4j: connecting Neo4j and Cytoscape.
    Summer G, Kelder T, Ono K, Radonjic M, Heymans S, Demchak B.
    Bioinformatics; 2015 Dec 01; 31(23):3868-9. PubMed ID: 26272981
    [Abstract] [Full Text] [Related]

  • 14. Quantifying App Store Dynamics: Longitudinal Tracking of Mental Health Apps.
    Larsen ME, Nicholas J, Christensen H.
    JMIR Mhealth Uhealth; 2016 Aug 09; 4(3):e96. PubMed ID: 27507641
    [Abstract] [Full Text] [Related]

  • 15. CyAnimator: Simple Animations of Cytoscape Networks.
    Morris JH, Vijay D, Federowicz S, Pico AR, Ferrin TE.
    F1000Res; 2015 Aug 09; 4():482. PubMed ID: 26937268
    [Abstract] [Full Text] [Related]

  • 16. CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API.
    Ono K, Muetze T, Kolishovski G, Shannon P, Demchak B.
    F1000Res; 2015 Aug 09; 4():478. PubMed ID: 26672762
    [Abstract] [Full Text] [Related]

  • 17. The DisGeNET cytoscape app: Exploring and visualizing disease genomics data.
    Piñero J, Saüch J, Sanz F, Furlong LI.
    Comput Struct Biotechnol J; 2021 Aug 09; 19():2960-2967. PubMed ID: 34136095
    [Abstract] [Full Text] [Related]

  • 18. PetriScape - A plugin for discrete Petri net simulations in Cytoscape.
    Almeida D, Azevedo V, Silva A, Baumbach J.
    J Integr Bioinform; 2016 Jun 04; 13(1):284. PubMed ID: 27402693
    [Abstract] [Full Text] [Related]

  • 19. CyNetworkBMA: a Cytoscape app for inferring gene regulatory networks.
    Fronczuk M, Raftery AE, Yeung KY.
    Source Code Biol Med; 2015 Jun 04; 10():11. PubMed ID: 26566394
    [Abstract] [Full Text] [Related]

  • 20. Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs).
    Pierrelée M, Reynders A, Lopez F, Moqrich A, Tichit L, Habermann BH.
    Sci Rep; 2021 Jul 01; 11(1):13691. PubMed ID: 34211067
    [Abstract] [Full Text] [Related]

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