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Journal Abstract Search

190 related items for PubMed ID: 25609797

  • 1. Topology-function conservation in protein-protein interaction networks.
    Davis D, Yaveroğlu ÖN, Malod-Dognin N, Stojmirovic A, Pržulj N.
    Bioinformatics; 2015 May 15; 31(10):1632-9. PubMed ID: 25609797
    [Abstract] [Full Text] [Related]

  • 2. Integration of molecular network data reconstructs Gene Ontology.
    Gligorijević V, Janjić V, Pržulj N.
    Bioinformatics; 2014 Sep 01; 30(17):i594-600. PubMed ID: 25161252
    [Abstract] [Full Text] [Related]

  • 3. Comparison of protein interaction networks reveals species conservation and divergence.
    Liang Z, Xu M, Teng M, Niu L.
    BMC Bioinformatics; 2006 Oct 17; 7():457. PubMed ID: 17044912
    [Abstract] [Full Text] [Related]

  • 4.
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  • 5. Identifying conserved protein complexes between species by constructing interolog networks.
    Nguyen PV, Srihari S, Leong HW.
    BMC Bioinformatics; 2013 Oct 17; 14 Suppl 16(Suppl 16):S8. PubMed ID: 24564762
    [Abstract] [Full Text] [Related]

  • 6. AVID: an integrative framework for discovering functional relationships among proteins.
    Jiang T, Keating AE.
    BMC Bioinformatics; 2005 Jun 01; 6():136. PubMed ID: 15929793
    [Abstract] [Full Text] [Related]

  • 7. The relative vertex clustering value--a new criterion for the fast discovery of functional modules in protein interaction networks.
    Ibrahim ZM, Ngom A.
    BMC Bioinformatics; 2015 Jun 01; 16 Suppl 4(Suppl 4):S3. PubMed ID: 25734691
    [Abstract] [Full Text] [Related]

  • 8. Modular biological function is most effectively captured by combining molecular interaction data types.
    Ames RM, Macpherson JI, Pinney JW, Lovell SC, Robertson DL.
    PLoS One; 2013 Jun 01; 8(5):e62670. PubMed ID: 23658761
    [Abstract] [Full Text] [Related]

  • 9. Topological network alignment uncovers biological function and phylogeny.
    Kuchaiev O, Milenkovic T, Memisevic V, Hayes W, Przulj N.
    J R Soc Interface; 2010 Sep 06; 7(50):1341-54. PubMed ID: 20236959
    [Abstract] [Full Text] [Related]

  • 10. Differential evolutionary conservation of motif modes in the yeast protein interaction network.
    Lee WP, Jeng BC, Pai TW, Tsai CP, Yu CY, Tzou WS.
    BMC Genomics; 2006 Apr 25; 7():89. PubMed ID: 16638125
    [Abstract] [Full Text] [Related]

  • 11. Identifying essential proteins from protein-protein interaction networks based on influence maximization.
    Xu W, Dong Y, Guan J, Zhou S.
    BMC Bioinformatics; 2022 Aug 16; 23(Suppl 8):339. PubMed ID: 35974329
    [Abstract] [Full Text] [Related]

  • 12. RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications.
    Alkan F, Erten C.
    Bioinformatics; 2017 Feb 15; 33(4):537-544. PubMed ID: 27797764
    [Abstract] [Full Text] [Related]

  • 13. A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks.
    Wang J, Li M, Chen J, Pan Y.
    IEEE/ACM Trans Comput Biol Bioinform; 2011 Feb 15; 8(3):607-20. PubMed ID: 20733244
    [Abstract] [Full Text] [Related]

  • 14. Integrative network alignment reveals large regions of global network similarity in yeast and human.
    Kuchaiev O, Przulj N.
    Bioinformatics; 2011 May 15; 27(10):1390-6. PubMed ID: 21414992
    [Abstract] [Full Text] [Related]

  • 15. Joint clustering of protein interaction networks through Markov random walk.
    Wang Y, Qian X.
    BMC Syst Biol; 2014 May 15; 8 Suppl 1(Suppl 1):S9. PubMed ID: 24565376
    [Abstract] [Full Text] [Related]

  • 16. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.
    Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J.
    BMC Bioinformatics; 2015 Feb 14; 16():44. PubMed ID: 25886899
    [Abstract] [Full Text] [Related]

  • 17. The topology of the bacterial co-conserved protein network and its implications for predicting protein function.
    Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.
    BMC Genomics; 2008 Jun 30; 9():313. PubMed ID: 18590549
    [Abstract] [Full Text] [Related]

  • 18. Topology aware functional similarity of protein interaction networks based on gene ontology.
    Li F, Cui X, Xie D, Bo X, Wang S.
    Annu Int Conf IEEE Eng Med Biol Soc; 2011 Jun 30; 2011():6857-60. PubMed ID: 22255914
    [Abstract] [Full Text] [Related]

  • 19. Exploiting ontology graph for predicting sparsely annotated gene function.
    Wang S, Cho H, Zhai C, Berger B, Peng J.
    Bioinformatics; 2015 Jun 15; 31(12):i357-64. PubMed ID: 26072504
    [Abstract] [Full Text] [Related]

  • 20. Topology-free querying of protein interaction networks.
    Bruckner S, Hüffner F, Karp RM, Shamir R, Sharan R.
    J Comput Biol; 2010 Mar 15; 17(3):237-52. PubMed ID: 20377443
    [Abstract] [Full Text] [Related]

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