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PUBMED FOR HANDHELDS

Journal Abstract Search

272 related items for PubMed ID: 25682954

  • 1.
    ; . PubMed ID:
    [No Abstract] [Full Text] [Related]

  • 2. Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins.
    Nikitin D, Penzar D, Garazha A, Sorokin M, Tkachev V, Borisov N, Poltorak A, Prassolov V, Buzdin AA.
    Front Immunol; 2018; 9():30. PubMed ID: 29441061
    [Abstract] [Full Text] [Related]

  • 3. The accessible chromatin landscape of the human genome.
    Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA.
    Nature; 2012 Sep 06; 489(7414):75-82. PubMed ID: 22955617
    [Abstract] [Full Text] [Related]

  • 4. Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.
    Lan X, Witt H, Katsumura K, Ye Z, Wang Q, Bresnick EH, Farnham PJ, Jin VX.
    Nucleic Acids Res; 2012 Sep 06; 40(16):7690-704. PubMed ID: 22675074
    [Abstract] [Full Text] [Related]

  • 5. Modeling co-occupancy of transcription factors using chromatin features.
    Liu L, Zhao W, Zhou X.
    Nucleic Acids Res; 2016 Mar 18; 44(5):e49. PubMed ID: 26590261
    [Abstract] [Full Text] [Related]

  • 6. Exploring spatially adjacent TFBS-clustered regions with Hi-C data.
    Chen H, Jiang S, Zhang Z, Li H, Lu Y, Bo X.
    Bioinformatics; 2017 Sep 01; 33(17):2611-2614. PubMed ID: 28472433
    [Abstract] [Full Text] [Related]

  • 7.
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  • 8. Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features.
    Kumar S, Bucher P.
    BMC Bioinformatics; 2016 Jan 11; 17 Suppl 1(Suppl 1):4. PubMed ID: 26818008
    [Abstract] [Full Text] [Related]

  • 9. Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters.
    Kininis M, Chen BS, Diehl AG, Isaacs GD, Zhang T, Siepel AC, Clark AG, Kraus WL.
    Mol Cell Biol; 2007 Jul 11; 27(14):5090-104. PubMed ID: 17515612
    [Abstract] [Full Text] [Related]

  • 10. All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues.
    Rozenberg JM, Shlyakhtenko A, Glass K, Rishi V, Myakishev MV, FitzGerald PC, Vinson C.
    BMC Genomics; 2008 Feb 05; 9():67. PubMed ID: 18252004
    [Abstract] [Full Text] [Related]

  • 11. Understanding the combinatorial action of transcription factors and microRNA regulation from regions of open chromatin.
    Zheng G, Zhang P, Wu Z, Dong D.
    Mol Biosyst; 2016 Feb 05; 12(2):371-8. PubMed ID: 26661887
    [Abstract] [Full Text] [Related]

  • 12. TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity.
    Sammons MA, Zhu J, Drake AM, Berger SL.
    Genome Res; 2015 Feb 05; 25(2):179-88. PubMed ID: 25391375
    [Abstract] [Full Text] [Related]

  • 13. Integrating genomic data to predict transcription factor binding.
    Holloway DT, Kon M, DeLisi C.
    Genome Inform; 2005 Feb 05; 16(1):83-94. PubMed ID: 16362910
    [Abstract] [Full Text] [Related]

  • 14. Role of chromatin and transcriptional co-regulators in mediating p63-genome interactions in keratinocytes.
    Sethi I, Sinha S, Buck MJ.
    BMC Genomics; 2014 Nov 29; 15(1):1042. PubMed ID: 25433490
    [Abstract] [Full Text] [Related]

  • 15. Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression.
    Murakami K, Kojima T, Sakaki Y.
    BMC Genomics; 2004 Feb 23; 5(1):16. PubMed ID: 15053842
    [Abstract] [Full Text] [Related]

  • 16. Rare genetic variation at transcription factor binding sites modulates local DNA methylation profiles.
    Martin-Trujillo A, Patel N, Richter F, Jadhav B, Garg P, Morton SU, McKean DM, DePalma SR, Goldmuntz E, Gruber D, Kim R, Newburger JW, Porter GA, Giardini A, Bernstein D, Tristani-Firouzi M, Seidman JG, Seidman CE, Chung WK, Gelb BD, Sharp AJ.
    PLoS Genet; 2020 Nov 23; 16(11):e1009189. PubMed ID: 33216750
    [Abstract] [Full Text] [Related]

  • 17. Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility.
    Chen X, Yu B, Carriero N, Silva C, Bonneau R.
    Nucleic Acids Res; 2017 May 05; 45(8):4315-4329. PubMed ID: 28334916
    [Abstract] [Full Text] [Related]

  • 18. MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles.
    Xuan Lin QX, Sian S, An O, Thieffry D, Jha S, Benoukraf T.
    Nucleic Acids Res; 2019 Jan 08; 47(D1):D145-D154. PubMed ID: 30380113
    [Abstract] [Full Text] [Related]

  • 19.
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  • 20. Differential regulation of the IL-10 gene in Th1 and Th2 T cells.
    Kang KH, Im SH.
    Ann N Y Acad Sci; 2005 Jun 08; 1050():97-107. PubMed ID: 16014524
    [Abstract] [Full Text] [Related]

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