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Journal Abstract Search

240 related items for PubMed ID: 25892709

  • 1. Essential protein identification based on essential protein-protein interaction prediction by Integrated Edge Weights.
    Jiang Y, Wang Y, Pang W, Chen L, Sun H, Liang Y, Blanzieri E.
    Methods; 2015 Jul 15; 83():51-62. PubMed ID: 25892709
    [Abstract] [Full Text] [Related]

  • 2. Identification of essential proteins based on ranking edge-weights in protein-protein interaction networks.
    Wang Y, Sun H, Du W, Blanzieri E, Viero G, Xu Y, Liang Y.
    PLoS One; 2014 Jul 15; 9(9):e108716. PubMed ID: 25268881
    [Abstract] [Full Text] [Related]

  • 3. Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes.
    Luo J, Qi Y.
    PLoS One; 2015 Jul 15; 10(6):e0131418. PubMed ID: 26125187
    [Abstract] [Full Text] [Related]

  • 4. Essential Protein Detection by Random Walk on Weighted Protein-Protein Interaction Networks.
    Xu B, Guan J, Wang Y, Wang Z.
    IEEE/ACM Trans Comput Biol Bioinform; 2019 Jul 15; 16(2):377-387. PubMed ID: 28504946
    [Abstract] [Full Text] [Related]

  • 5. Computational reconstruction of protein-protein interaction networks: algorithms and issues.
    Franzosa E, Linghu B, Xia Y.
    Methods Mol Biol; 2009 Jul 15; 541():89-100. PubMed ID: 19381528
    [Abstract] [Full Text] [Related]

  • 6. Global alignment of protein-protein interaction networks.
    Mongiovì M, Sharan R.
    Methods Mol Biol; 2013 Jul 15; 939():21-34. PubMed ID: 23192538
    [Abstract] [Full Text] [Related]

  • 7. Protein complex prediction with RNSC.
    King AD, Pržulj N, Jurisica I.
    Methods Mol Biol; 2012 Jul 15; 804():297-312. PubMed ID: 22144160
    [Abstract] [Full Text] [Related]

  • 8. UDoNC: An Algorithm for Identifying Essential Proteins Based on Protein Domains and Protein-Protein Interaction Networks.
    Peng W, Wang J, Cheng Y, Lu Y, Wu F, Pan Y.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Jul 15; 12(2):276-88. PubMed ID: 26357216
    [Abstract] [Full Text] [Related]

  • 9. An integrative C. elegans protein-protein interaction network with reliability assessment based on a probabilistic graphical model.
    Huang XT, Zhu Y, Chan LL, Zhao Z, Yan H.
    Mol Biosyst; 2016 Jan 15; 12(1):85-92. PubMed ID: 26555698
    [Abstract] [Full Text] [Related]

  • 10. Identifying essential proteins based on sub-network partition and prioritization by integrating subcellular localization information.
    Li M, Li W, Wu FX, Pan Y, Wang J.
    J Theor Biol; 2018 Jun 14; 447():65-73. PubMed ID: 29571709
    [Abstract] [Full Text] [Related]

  • 11. A Central Edge Selection Based Overlapping Community Detection Algorithm for the Detection of Overlapping Structures in Protein⁻Protein Interaction Networks.
    Zhang F, Ma A, Wang Z, Ma Q, Liu B, Huang L, Wang Y.
    Molecules; 2018 Oct 13; 23(10):. PubMed ID: 30322177
    [Abstract] [Full Text] [Related]

  • 12. Essential protein discovery based on a combination of modularity and conservatism.
    Zhao B, Wang J, Li X, Wu FX.
    Methods; 2016 Nov 01; 110():54-63. PubMed ID: 27402354
    [Abstract] [Full Text] [Related]

  • 13. Information flow analysis of interactome networks.
    Missiuro PV, Liu K, Zou L, Ross BC, Zhao G, Liu JS, Ge H.
    PLoS Comput Biol; 2009 Apr 01; 5(4):e1000350. PubMed ID: 19503817
    [Abstract] [Full Text] [Related]

  • 14. A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks.
    Li M, Lu Y, Wang J, Wu FX, Pan Y.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Apr 01; 12(2):372-83. PubMed ID: 26357224
    [Abstract] [Full Text] [Related]

  • 15. Genome-wide prediction of C. elegans genetic interactions.
    Zhong W, Sternberg PW.
    Science; 2006 Mar 10; 311(5766):1481-4. PubMed ID: 16527984
    [Abstract] [Full Text] [Related]

  • 16. A New Method for Identifying Essential Proteins by Measuring Co-Expression and Functional Similarity.
    Zhang W, Xu J, Li X, Zou X.
    IEEE Trans Nanobioscience; 2016 Dec 10; 15(8):939-945. PubMed ID: 27834650
    [Abstract] [Full Text] [Related]

  • 17. Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources.
    Taghipour S, Zarrineh P, Ganjtabesh M, Nowzari-Dalini A.
    BMC Bioinformatics; 2017 Jan 03; 18(1):10. PubMed ID: 28049415
    [Abstract] [Full Text] [Related]

  • 18. Efficient and accurate Greedy Search Methods for mining functional modules in protein interaction networks.
    He J, Li C, Ye B, Zhong W.
    BMC Bioinformatics; 2012 Jun 25; 13 Suppl 10(Suppl 10):S19. PubMed ID: 22759424
    [Abstract] [Full Text] [Related]

  • 19. Predicting protein-protein interactions from multimodal biological data sources via nonnegative matrix tri-factorization.
    Wang H, Huang H, Ding C, Nie F.
    J Comput Biol; 2013 Apr 25; 20(4):344-58. PubMed ID: 23509857
    [Abstract] [Full Text] [Related]

  • 20. Detecting protein complexes in a PPI network: a gene ontology based multi-objective evolutionary approach.
    Mukhopadhyay A, Ray S, De M.
    Mol Biosyst; 2012 Nov 25; 8(11):3036-48. PubMed ID: 22990765
    [Abstract] [Full Text] [Related]

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