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167 related items for PubMed ID: 26215455

  • 1. The influence of hypermodified nucleosides lysidine and t(6)A to recognize the AUA codon instead of AUG: a molecular dynamics simulation study.
    Sonawane KD, Sambhare SB.
    Integr Biol (Camb); 2015 Nov; 7(11):1387-95. PubMed ID: 26215455
    [Abstract] [Full Text] [Related]

  • 2. Conformational preferences of hypermodified nucleoside lysidine (k2C) occurring at "wobble" position in anticodon loop of tRNA(Ile).
    Sonawane KD, Tewari R.
    Nucleosides Nucleotides Nucleic Acids; 2008 Oct; 27(10):1158-74. PubMed ID: 18788046
    [Abstract] [Full Text] [Related]

  • 3. Convergent evolution of AUA decoding in bacteria and archaea.
    Suzuki T, Numata T.
    RNA Biol; 2014 Oct; 11(12):1586-96. PubMed ID: 25629511
    [Abstract] [Full Text] [Related]

  • 4. Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance.
    Rybak MY, Gagnon MG.
    Nat Struct Mol Biol; 2024 May; 31(5):810-816. PubMed ID: 38538914
    [Abstract] [Full Text] [Related]

  • 5. Conformational preferences and structural analysis of hypermodified nucleoside, peroxywybutosine (o2yW) found at 37th position in anticodon loop of tRNAPhe and its role in modulating UUC codon-anticodon interactions.
    Fandilolu PM, Kamble AS, Sambhare SB, Sonawane KD.
    Gene; 2018 Jan 30; 641():310-325. PubMed ID: 29107006
    [Abstract] [Full Text] [Related]

  • 6. Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.
    Sonawane KD, Kamble AS, Fandilolu PM.
    J Biomol Struct Dyn; 2018 Dec 30; 36(16):4182-4196. PubMed ID: 29243556
    [Abstract] [Full Text] [Related]

  • 7. Conformational preferences of modified nucleoside N(4)-acetylcytidine, ac4C occur at "wobble" 34th position in the anticodon loop of tRNA.
    Kumbhar BV, Kamble AD, Sonawane KD.
    Cell Biochem Biophys; 2013 Jul 30; 66(3):797-816. PubMed ID: 23408308
    [Abstract] [Full Text] [Related]

  • 8. Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine.
    Akiyama N, Ishiguro K, Yokoyama T, Miyauchi K, Nagao A, Shirouzu M, Suzuki T.
    Nat Struct Mol Biol; 2024 May 30; 31(5):817-825. PubMed ID: 38538915
    [Abstract] [Full Text] [Related]

  • 9. Life without the essential bacterial tRNA Ile2-lysidine synthetase TilS: a case of tRNA gene recruitment in Bacillus subtilis.
    Fabret C, Dervyn E, Dalmais B, Guillot A, Marck C, Grosjean H, Noirot P.
    Mol Microbiol; 2011 May 30; 80(4):1062-74. PubMed ID: 21435031
    [Abstract] [Full Text] [Related]

  • 10. An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA.
    Soma A, Ikeuchi Y, Kanemasa S, Kobayashi K, Ogasawara N, Ote T, Kato J, Watanabe K, Sekine Y, Suzuki T.
    Mol Cell; 2003 Sep 30; 12(3):689-98. PubMed ID: 14527414
    [Abstract] [Full Text] [Related]

  • 11. molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition.
    Ikeuchi Y, Soma A, Ote T, Kato J, Sekine Y, Suzuki T.
    Mol Cell; 2005 Jul 22; 19(2):235-46. PubMed ID: 16039592
    [Abstract] [Full Text] [Related]

  • 12. Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Mycoplasma mobile.
    Taniguchi T, Miyauchi K, Nakane D, Miyata M, Muto A, Nishimura S, Suzuki T.
    Nucleic Acids Res; 2013 Feb 01; 41(4):2621-31. PubMed ID: 23295668
    [Abstract] [Full Text] [Related]

  • 13. Discovery and characterization of tRNAIle lysidine synthetase (TilS).
    Suzuki T, Miyauchi K.
    FEBS Lett; 2010 Jan 21; 584(2):272-7. PubMed ID: 19944692
    [Abstract] [Full Text] [Related]

  • 14. Characterization of a B. subtilis minor isoleucine tRNA deduced from tDNA having a methionine anticodon CAT.
    Matsugi J, Murao K, Ishikura H.
    J Biochem; 1996 Apr 21; 119(4):811-6. PubMed ID: 8743586
    [Abstract] [Full Text] [Related]

  • 15. Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain.
    Nakanishi K, Fukai S, Ikeuchi Y, Soma A, Sekine Y, Suzuki T, Nureki O.
    Proc Natl Acad Sci U S A; 2005 May 24; 102(21):7487-92. PubMed ID: 15894617
    [Abstract] [Full Text] [Related]

  • 16. Identification and codon reading properties of 5-cyanomethyl uridine, a new modified nucleoside found in the anticodon wobble position of mutant haloarchaeal isoleucine tRNAs.
    Mandal D, Köhrer C, Su D, Babu IR, Chan CT, Liu Y, Söll D, Blum P, Kuwahara M, Dedon PC, Rajbhandary UL.
    RNA; 2014 Feb 24; 20(2):177-88. PubMed ID: 24344322
    [Abstract] [Full Text] [Related]

  • 17. Structural Significance of Conformational Preferences and Ribose-Ring-Puckering of Hyper Modified Nucleotide 5'-Monophosphate 2-Methylthio Cyclic N6-Threonylcarbamoyladenosine (p-ms2ct6A) Present at 37th Position in Anticodon Loop of tRNALys.
    Dound AS, Fandilolu PM, Sonawane KD.
    Cell Biochem Biophys; 2022 Dec 24; 80(4):665-680. PubMed ID: 35965304
    [Abstract] [Full Text] [Related]

  • 18. Evolution of the mitochondrial genetic code. II. Reassignment of codon AUA from isoleucine to methionine.
    Osawa S, Ohama T, Jukes TH, Watanabe K, Yokoyama S.
    J Mol Evol; 1989 Nov 24; 29(5):373-80. PubMed ID: 2515289
    [Abstract] [Full Text] [Related]

  • 19. Structural significance of hypermodified nucleic acid base hydroxywybutine (OHyW) which occur at 37th position in the anticodon loop of yeast tRNA(Phe).
    Kumbhar NM, Kumbhar BV, Sonawane KD.
    J Mol Graph Model; 2012 Sep 24; 38():174-85. PubMed ID: 23073221
    [Abstract] [Full Text] [Related]

  • 20. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

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