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196 related items for PubMed ID: 26244744

  • 1. Nascent β-Hairpin Formation of a Natively Unfolded Peptide Reveals the Role of Hydrophobic Contacts.
    Chen W, Shi C, Shen J.
    Biophys J; 2015 Aug 04; 109(3):630-8. PubMed ID: 26244744
    [Abstract] [Full Text] [Related]

  • 2. Conformational Dynamics of Two Natively Unfolded Fragment Peptides: Comparison of the AMBER and CHARMM Force Fields.
    Chen W, Shi C, MacKerell AD, Shen J.
    J Phys Chem B; 2015 Jun 25; 119(25):7902-10. PubMed ID: 26020564
    [Abstract] [Full Text] [Related]

  • 3. Characterization of large peptide fragments derived from the N-terminal domain of the ribosomal protein L9: definition of the minimum folding motif and characterization of local electrostatic interactions.
    Horng JC, Moroz V, Rigotti DJ, Fairman R, Raleigh DP.
    Biochemistry; 2002 Nov 12; 41(45):13360-9. PubMed ID: 12416980
    [Abstract] [Full Text] [Related]

  • 4. The unfolded state of NTL9 is compact in the absence of denaturant.
    Anil B, Li Y, Cho JH, Raleigh DP.
    Biochemistry; 2006 Aug 22; 45(33):10110-6. PubMed ID: 16906769
    [Abstract] [Full Text] [Related]

  • 5. Effect of charged amino acid side chain length on lateral cross-strand interactions between carboxylate-containing residues and lysine analogues in a β-hairpin.
    Kuo HT, Fang CJ, Tsai HY, Yang MF, Chang HC, Liu SL, Kuo LH, Wang WR, Yang PA, Huang SJ, Huang SL, Cheng RP.
    Biochemistry; 2013 Dec 23; 52(51):9212-22. PubMed ID: 24328126
    [Abstract] [Full Text] [Related]

  • 6. Molecular dynamics simulations of certain mutant peptide models from staphylococcal nuclease reveal that initial hydrophobic collapse associated with turn propensity drives β-hairpin folding.
    Shukla RT, Kumar N, Sasidhar YU.
    J Pept Sci; 2013 Aug 23; 19(8):516-27. PubMed ID: 23794524
    [Abstract] [Full Text] [Related]

  • 7. Ultrafast folding and molecular dynamics of a linear hydrophobic β-hairpin.
    Raghavender US.
    J Biomol Struct Dyn; 2013 Dec 23; 31(12):1404-10. PubMed ID: 23145986
    [Abstract] [Full Text] [Related]

  • 8. Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.
    Ma B, Nussinov R.
    J Mol Biol; 2000 Mar 03; 296(4):1091-104. PubMed ID: 10686106
    [Abstract] [Full Text] [Related]

  • 9. Detailed microscopic unfolding pathways of an α-helix and a β-hairpin: direct observation and molecular dynamics.
    Jas GS, Hegefeld WA, Middaugh CR, Johnson CK, Kuczera K.
    J Phys Chem B; 2014 Jul 03; 118(26):7233-46. PubMed ID: 24897620
    [Abstract] [Full Text] [Related]

  • 10. Experiments and simulations show how long-range contacts can form in expanded unfolded proteins with negligible secondary structure.
    Meng W, Lyle N, Luan B, Raleigh DP, Pappu RV.
    Proc Natl Acad Sci U S A; 2013 Feb 05; 110(6):2123-8. PubMed ID: 23341588
    [Abstract] [Full Text] [Related]

  • 11. Unfolding simulations of the 85-102 beta-hairpin of barnase.
    Pugliese L, Prévost M, Wodak SJ.
    J Mol Biol; 1995 Aug 18; 251(3):432-47. PubMed ID: 7650741
    [Abstract] [Full Text] [Related]

  • 12. The N-Terminal Domain of Ribosomal Protein L9 Folds via a Diffuse and Delocalized Transition State.
    Sato S, Cho JH, Peran I, Soydaner-Azeloglu RG, Raleigh DP.
    Biophys J; 2017 May 09; 112(9):1797-1806. PubMed ID: 28494951
    [Abstract] [Full Text] [Related]

  • 13. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.
    Griffiths-Jones SR, Maynard AJ, Searle MS.
    J Mol Biol; 1999 Oct 08; 292(5):1051-69. PubMed ID: 10512702
    [Abstract] [Full Text] [Related]

  • 14. Residual electrostatic effects in the unfolded state of the N-terminal domain of L9 can be attributed to nonspecific nonlocal charge-charge interactions.
    Zhou HX.
    Biochemistry; 2002 May 21; 41(20):6533-8. PubMed ID: 12009918
    [Abstract] [Full Text] [Related]

  • 15. Effect of charged amino acid side chain length on lateral cross-strand interactions between carboxylate- and guanidinium-containing residues in a β-hairpin.
    Kuo HT, Liu SL, Chiu WC, Fang CJ, Chang HC, Wang WR, Yang PA, Li JH, Huang SJ, Huang SL, Cheng RP.
    Amino Acids; 2015 May 21; 47(5):885-98. PubMed ID: 25646959
    [Abstract] [Full Text] [Related]

  • 16. pKa values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions.
    Kuhlman B, Luisi DL, Young P, Raleigh DP.
    Biochemistry; 1999 Apr 13; 38(15):4896-903. PubMed ID: 10200179
    [Abstract] [Full Text] [Related]

  • 17. The effect of context on the folding of β-hairpins.
    Jonsson AL, Daggett V.
    J Struct Biol; 2011 Nov 13; 176(2):143-50. PubMed ID: 21843644
    [Abstract] [Full Text] [Related]

  • 18. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T, Sugita Y, Okamoto Y.
    Proteins; 2007 Mar 01; 66(4):846-59. PubMed ID: 17173285
    [Abstract] [Full Text] [Related]

  • 19. The effects of side chain hydrophobicity on the denaturation of simple beta-hairpins.
    Wei H, Shao Q, Gao YQ.
    Phys Chem Chem Phys; 2010 Aug 28; 12(32):9292-9. PubMed ID: 20571679
    [Abstract] [Full Text] [Related]

  • 20. Folding thermodynamics of β-hairpins studied by replica-exchange molecular dynamics simulations.
    Zerze GH, Uz B, Mittal J.
    Proteins; 2015 Jul 28; 83(7):1307-15. PubMed ID: 25973961
    [Abstract] [Full Text] [Related]

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