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Journal Abstract Search

984 related items for PubMed ID: 26269100

  • 1. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
    Ndhlovu A, Hazelhurst S, Durand PM.
    BMC Bioinformatics; 2015 Aug 14; 16():255. PubMed ID: 26269100
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  • 3. EvoDB: a database of evolutionary rate profiles, associated protein domains and phylogenetic trees for PFAM-A.
    Ndhlovu A, Durand PM, Hazelhurst S.
    Database (Oxford); 2015 Aug 14; 2015():bav065. PubMed ID: 26140928
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  • 4. Optimizing amino acid substitution matrices with a local alignment kernel.
    Saigo H, Vert JP, Akutsu T.
    BMC Bioinformatics; 2006 May 05; 7():246. PubMed ID: 16677385
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  • 7. The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion.
    Polyanovsky V, Lifanov A, Esipova N, Tumanyan V.
    BMC Bioinformatics; 2020 Sep 14; 21(Suppl 11):294. PubMed ID: 32921315
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  • 11. Enriching the sequence substitution matrix by structural information.
    Teodorescu O, Galor T, Pillardy J, Elber R.
    Proteins; 2004 Jan 01; 54(1):41-8. PubMed ID: 14705022
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  • 12. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J, Deremble C, Carbone A.
    Proteins; 2007 May 15; 67(3):695-708. PubMed ID: 17299747
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  • 14. PFASUM: a substitution matrix from Pfam structural alignments.
    Keul F, Hess M, Goesele M, Hamacher K.
    BMC Bioinformatics; 2017 Jun 05; 18(1):293. PubMed ID: 28583067
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  • 15. A metric model of amino acid substitution.
    Xu W, Miranker DP.
    Bioinformatics; 2004 May 22; 20(8):1214-21. PubMed ID: 14871874
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  • 17. A transition probability model for amino acid substitutions from blocks.
    Veerassamy S, Smith A, Tillier ER.
    J Comput Biol; 2003 May 22; 10(6):997-1010. PubMed ID: 14980022
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  • 18. Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.
    Lin HN, Notredame C, Chang JM, Sung TY, Hsu WL.
    PLoS One; 2011 May 22; 6(12):e27872. PubMed ID: 22163274
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  • 19. The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.
    Yu YK, Altschul SF.
    Bioinformatics; 2005 Apr 01; 21(7):902-11. PubMed ID: 15509610
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  • 20. Using CLUSTAL for multiple sequence alignments.
    Higgins DG, Thompson JD, Gibson TJ.
    Methods Enzymol; 1996 Apr 01; 266():383-402. PubMed ID: 8743695
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