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Journal Abstract Search

140 related items for PubMed ID: 26388706

  • 1. Effects of Acids, Bases, and Heteroatoms on Proximal Radial Distribution Functions for Proteins.
    Nguyen BL, Pettitt BM.
    J Chem Theory Comput; 2015 Apr 14; 11(4):1399-409. PubMed ID: 26388706
    [Abstract] [Full Text] [Related]

  • 2. Reconstructing the protein-water interface.
    Makarov VA, Andrews BK, Pettitt BM.
    Biopolymers; 1998 Jun 14; 45(7):469-78. PubMed ID: 9577228
    [Abstract] [Full Text] [Related]

  • 3. Modeling the hydration layer around proteins: HyPred.
    Virtanen JJ, Makowski L, Sosnick TR, Freed KF.
    Biophys J; 2010 Sep 08; 99(5):1611-9. PubMed ID: 20816074
    [Abstract] [Full Text] [Related]

  • 4. Contributions of higher-order proximal distribution functions to solvent structure around proteins.
    Yousefi R, Lynch GC, Galbraith M, Pettitt BM.
    J Chem Phys; 2021 Sep 14; 155(10):104110. PubMed ID: 34525817
    [Abstract] [Full Text] [Related]

  • 5. Solvation and cavity occupation in biomolecules.
    Lynch GC, Perkyns JS, Nguyen BL, Pettitt BM.
    Biochim Biophys Acta; 2015 May 14; 1850(5):923-931. PubMed ID: 25261777
    [Abstract] [Full Text] [Related]

  • 6. Simulation studies of the protein-water interface. I. Properties at the molecular resolution.
    Schröder C, Rudas T, Boresch S, Steinhauser O.
    J Chem Phys; 2006 Jun 21; 124(23):234907. PubMed ID: 16821953
    [Abstract] [Full Text] [Related]

  • 7. A molecular dynamics study of solvent behavior around a protein.
    Komeiji Y, Uebayasi M, Someya J, Yamato I.
    Proteins; 1993 Jul 21; 16(3):268-77. PubMed ID: 8346192
    [Abstract] [Full Text] [Related]

  • 8. Hydration free energies of amino acids: why side chain analog data are not enough.
    König G, Boresch S.
    J Phys Chem B; 2009 Jul 02; 113(26):8967-74. PubMed ID: 19507836
    [Abstract] [Full Text] [Related]

  • 9. Atomic hydration potentials using a Monte Carlo Reference State (MCRS) for protein solvation modeling.
    Rakhmanov SV, Makeev VJ.
    BMC Struct Biol; 2007 Mar 30; 7():19. PubMed ID: 17397537
    [Abstract] [Full Text] [Related]

  • 10. Hydration Water Distribution around Intrinsically Disordered Proteins.
    Aggarwal L, Biswas P.
    J Phys Chem B; 2018 Apr 19; 122(15):4206-4218. PubMed ID: 29553735
    [Abstract] [Full Text] [Related]

  • 11. Distribution of solvent molecules around apolar side-chains in protein crystals.
    Walshaw J, Goodfellow JM.
    J Mol Biol; 1993 May 20; 231(2):392-414. PubMed ID: 8510154
    [Abstract] [Full Text] [Related]

  • 12. Tri-peptide reference structures for the calculation of relative solvent accessible surface area in protein amino acid residues.
    Topham CM, Smith JC.
    Comput Biol Chem; 2015 Feb 20; 54():33-43. PubMed ID: 25544680
    [Abstract] [Full Text] [Related]

  • 13. Molecular dynamics simulation of solvated azurin: correlation between surface solvent accessibility and water residence times.
    Luise A, Falconi M, Desideri A.
    Proteins; 2000 Apr 01; 39(1):56-67. PubMed ID: 10737927
    [Abstract] [Full Text] [Related]

  • 14. Solvation free energies of amino acid side chain analogs for common molecular mechanics water models.
    Shirts MR, Pande VS.
    J Chem Phys; 2005 Apr 01; 122(13):134508. PubMed ID: 15847482
    [Abstract] [Full Text] [Related]

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  • 17. Decomposition of protein experimental compressibility into intrinsic and hydration shell contributions.
    Dadarlat VM, Post CB.
    Biophys J; 2006 Dec 15; 91(12):4544-54. PubMed ID: 16997864
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  • 19. Protein-water interactions in MD simulations: POPS/POPSCOMP solvent accessibility analysis, solvation forces and hydration sites.
    Fornili A, Autore F, Chakroun N, Martinez P, Fraternali F.
    Methods Mol Biol; 2012 Dec 15; 819():375-92. PubMed ID: 22183548
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