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Journal Abstract Search

759 related items for PubMed ID: 26434730

  • 1. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
    Franzén O, Hu J, Bao X, Itzkowitz SH, Peter I, Bashir A.
    Microbiome; 2015 Oct 05; 3():43. PubMed ID: 26434730
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  • 3. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
    Myer PR, Kim M, Freetly HC, Smith TPL.
    J Microbiol Methods; 2016 Aug 05; 127():132-140. PubMed ID: 27282101
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  • 4. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A, Sanyal A, Perez GF, Colberg-Poley AM, Campos J, Rose MC, Pérez-Losada M.
    J Microbiol Methods; 2016 Nov 05; 130():95-99. PubMed ID: 27609714
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  • 6. A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis.
    Whelan FJ, Surette MG.
    Microbiome; 2017 Aug 14; 5(1):100. PubMed ID: 28807046
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  • 7. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
    Earl JP, Adappa ND, Krol J, Bhat AS, Balashov S, Ehrlich RL, Palmer JN, Workman AD, Blasetti M, Sen B, Hammond J, Cohen NA, Ehrlich GD, Mell JC.
    Microbiome; 2018 Oct 23; 6(1):190. PubMed ID: 30352611
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  • 8. OTUX: V-region specific OTU database for improved 16S rRNA OTU picking and efficient cross-study taxonomic comparison of microbiomes.
    Yadav D, Dutta A, Mande SS.
    DNA Res; 2019 Apr 01; 26(2):147-156. PubMed ID: 30624596
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  • 9. DBH: A de Bruijn graph-based heuristic method for clustering large-scale 16S rRNA sequences into OTUs.
    Wei ZG, Zhang SW.
    J Theor Biol; 2017 Jul 21; 425():80-87. PubMed ID: 28454900
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  • 10. Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR.
    Lazarevic V, Gaïa N, Girard M, Schrenzel J.
    BMC Microbiol; 2016 Apr 23; 16():73. PubMed ID: 27107811
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  • 11. MSClust: A Multi-Seeds based Clustering algorithm for microbiome profiling using 16S rRNA sequence.
    Chen W, Cheng Y, Zhang C, Zhang S, Zhao H.
    J Microbiol Methods; 2013 Sep 23; 94(3):347-55. PubMed ID: 23899776
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  • 12. bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences.
    Chen SY, Deng F, Huang Y, Jia X, Liu YP, Lai SJ.
    J Comput Biol; 2016 Apr 23; 23(4):229-38. PubMed ID: 26950196
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  • 13. Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow.
    Douglas GM, Comeau AM, Langille MGI.
    Methods Mol Biol; 2018 Apr 23; 1849():131-141. PubMed ID: 30298252
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  • 15. Assessment of a 16S rRNA amplicon Illumina sequencing procedure for studying the microbiome of a symbiont-rich aphid genus.
    Jousselin E, Clamens AL, Galan M, Bernard M, Maman S, Gschloessl B, Duport G, Meseguer AS, Calevro F, Coeur d'acier A.
    Mol Ecol Resour; 2016 May 23; 16(3):628-40. PubMed ID: 26458227
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  • 17. Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples.
    Buetas E, Jordán-López M, López-Roldán A, D'Auria G, Martínez-Priego L, De Marco G, Carda-Diéguez M, Mira A.
    BMC Genomics; 2024 Mar 25; 25(1):310. PubMed ID: 38528457
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  • 20. Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting.
    Nguyen TD, Schmidt B, Zheng Z, Kwoh CK.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Mar 25; 12(5):1060-73. PubMed ID: 26451819
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