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Journal Abstract Search

500 related items for PubMed ID: 26589402

  • 1. Practical guidelines for B-cell receptor repertoire sequencing analysis.
    Yaari G, Kleinstein SH.
    Genome Med; 2015 Nov 20; 7():121. PubMed ID: 26589402
    [Abstract] [Full Text] [Related]

  • 2. Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.
    Gadala-Maria D, Yaari G, Uduman M, Kleinstein SH.
    Proc Natl Acad Sci U S A; 2015 Feb 24; 112(8):E862-70. PubMed ID: 25675496
    [Abstract] [Full Text] [Related]

  • 3. Antigen Receptor Galaxy: A User-Friendly, Web-Based Tool for Analysis and Visualization of T and B Cell Receptor Repertoire Data.
    IJspeert H, van Schouwenburg PA, van Zessen D, Pico-Knijnenburg I, Stubbs AP, van der Burg M.
    J Immunol; 2017 May 15; 198(10):4156-4165. PubMed ID: 28416602
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  • 4. ASAP - A Webserver for Immunoglobulin-Sequencing Analysis Pipeline.
    Avram O, Vaisman-Mentesh A, Yehezkel D, Ashkenazy H, Pupko T, Wine Y.
    Front Immunol; 2018 May 15; 9():1686. PubMed ID: 30105017
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  • 5. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
    Bukhari SAC, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA, Rubelt F, Cheung KH, Kleinstein SH.
    Front Immunol; 2018 May 15; 9():1877. PubMed ID: 30166985
    [Abstract] [Full Text] [Related]

  • 6. Reconstructing and mining the B cell repertoire with ImmunediveRsity.
    Cortina-Ceballos B, Godoy-Lozano EE, Sámano-Sánchez H, Aguilar-Salgado A, Velasco-Herrera Mdel C, Vargas-Chávez C, Velázquez-Ramírez D, Romero G, Moreno J, Téllez-Sosa J, Martínez-Barnetche J.
    MAbs; 2015 May 15; 7(3):516-24. PubMed ID: 25875140
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  • 9. Analyzing Immunoglobulin Repertoires.
    Chaudhary N, Wesemann DR.
    Front Immunol; 2018 May 15; 9():462. PubMed ID: 29593723
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  • 10. ImmunoDataAnalyzer: a bioinformatics pipeline for processing barcoded and UMI tagged immunological NGS data.
    Vetter J, Schaller S, Heinzel A, Aschauer C, Reindl-Schwaighofer R, Jelencsics K, Hu K, Oberbauer R, Winkler SM.
    BMC Bioinformatics; 2022 Jan 06; 23(1):21. PubMed ID: 34991455
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  • 11. IRProfiler - a software toolbox for high throughput immune receptor profiling.
    Maramis C, Gkoufas A, Vardi A, Stalika E, Stamatopoulos K, Hatzidimitriou A, Maglaveras N, Chouvarda I.
    BMC Bioinformatics; 2018 Apr 18; 19(1):144. PubMed ID: 29669518
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  • 12. nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
    Gabernet G, Marquez S, Bjornson R, Peltzer A, Meng H, Aron E, Lee NY, Jensen CG, Ladd D, Polster M, Hanssen F, Heumos S, nf-core community, Yaari G, Kowarik MC, Nahnsen S, Kleinstein SH.
    PLoS Comput Biol; 2024 Jul 18; 20(7):e1012265. PubMed ID: 39058741
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  • 13. Overview of Sequence Data Formats.
    Zhang H.
    Methods Mol Biol; 2016 Jul 18; 1418():3-17. PubMed ID: 27008007
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  • 17. pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.
    Vander Heiden JA, Yaari G, Uduman M, Stern JN, O'Connor KC, Hafler DA, Vigneault F, Kleinstein SH.
    Bioinformatics; 2014 Jul 01; 30(13):1930-2. PubMed ID: 24618469
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  • 18. BRILIA: Integrated Tool for High-Throughput Annotation and Lineage Tree Assembly of B-Cell Repertoires.
    Lee DW, Khavrutskii IV, Wallqvist A, Bavari S, Cooper CL, Chaudhury S.
    Front Immunol; 2016 Jul 01; 7():681. PubMed ID: 28144239
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