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Journal Abstract Search

138 related items for PubMed ID: 26593345

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  • 2. Optimal Weights in Serial Generalized-Ensemble Simulations.
    Chelli R.
    J Chem Theory Comput; 2010 Jul 13; 6(7):1935-50. PubMed ID: 26615923
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  • 4. Simulated Tempering Distributed Replica Sampling, Virtual Replica Exchange, and Other Generalized-Ensemble Methods for Conformational Sampling.
    Rauscher S, Neale C, Pomès R.
    J Chem Theory Comput; 2009 Oct 13; 5(10):2640-62. PubMed ID: 26631779
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  • 5. Generalized simulated tempering realized on expanded ensembles of non-Boltzmann weights.
    Kim JG, Fukunishi Y, Kidera A, Nakamura H.
    J Chem Phys; 2004 Sep 22; 121(12):5590-601. PubMed ID: 15366981
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  • 7. Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations.
    Chodera JD, Swope WC, Pitera JW, Seok C, Dill KA.
    J Chem Theory Comput; 2007 Jan 22; 3(1):26-41. PubMed ID: 26627148
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  • 9. Comparison of the serial and parallel algorithms of generalized ensemble simulations: an analytical approach.
    Park S.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Jan 22; 77(1 Pt 2):016709. PubMed ID: 18351962
    [Abstract] [Full Text] [Related]

  • 10. Preserving the Boltzmann ensemble in replica-exchange molecular dynamics.
    Cooke B, Schmidler SC.
    J Chem Phys; 2008 Oct 28; 129(16):164112. PubMed ID: 19045252
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  • 14. Enhancing pairwise state-transition weights: A new weighting scheme in simulated tempering that can minimize transition time between a pair of conformational states.
    Qiao Q, Zhang HD, Huang X.
    J Chem Phys; 2016 Apr 21; 144(15):154107. PubMed ID: 27389209
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  • 15. Ligand docking simulations by generalized-ensemble algorithms.
    Okamoto Y, Kokubo H, Tanaka T.
    Adv Protein Chem Struct Biol; 2013 Apr 21; 92():63-91. PubMed ID: 23954099
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  • 16. Simulated-tempering replica-exchange method for the multidimensional version.
    Mitsutake A.
    J Chem Phys; 2009 Sep 07; 131(9):094105. PubMed ID: 19739847
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  • 18. Choosing weights for simulated tempering.
    Park S, Pande VS.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2007 Jul 07; 76(1 Pt 2):016703. PubMed ID: 17677590
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