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Journal Abstract Search

224 related items for PubMed ID: 26846964

  • 1. CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks.
    Paroni A, Graudenzi A, Caravagna G, Damiani C, Mauri G, Antoniotti M.
    BMC Bioinformatics; 2016 Feb 04; 17():64. PubMed ID: 26846964
    [Abstract] [Full Text] [Related]

  • 2. Development and use of a Cytoscape app for GRNCOP2.
    Díaz-Montaña JJ, Díaz-Díaz N, Barranco CD, Ponzoni I.
    Comput Methods Programs Biomed; 2019 Aug 04; 177():211-218. PubMed ID: 31319950
    [Abstract] [Full Text] [Related]

  • 3. GESTODIFFERENT: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process.
    Antoniotti M, Bader GD, Caravagna G, Crippa S, Graudenzi A, Mauri G.
    Bioinformatics; 2013 Feb 15; 29(4):513-4. PubMed ID: 23292740
    [Abstract] [Full Text] [Related]

  • 4. Applying attractor dynamics to infer gene regulatory interactions involved in cellular differentiation.
    Ghaffarizadeh A, Podgorski GJ, Flann NS.
    Biosystems; 2017 May 15; 155():29-41. PubMed ID: 28254369
    [Abstract] [Full Text] [Related]

  • 5. Modeling Cellular Differentiation and Reprogramming with Gene Regulatory Networks.
    Hartmann A, Ravichandran S, Del Sol A.
    Methods Mol Biol; 2019 May 15; 1975():37-51. PubMed ID: 31062304
    [Abstract] [Full Text] [Related]

  • 6. GNC-app: A new Cytoscape app to rate gene networks biological coherence using gene-gene indirect relationships.
    Díaz-Montaña JJ, Gómez-Vela F, Díaz-Díaz N.
    Biosystems; 2018 Apr 15; 166():61-65. PubMed ID: 29408296
    [Abstract] [Full Text] [Related]

  • 7. An extended gene protein/products Boolean network model including post-transcriptional regulation.
    Benso A, Di Carlo S, Politano G, Savino A, Vasciaveo A.
    Theor Biol Med Model; 2014 May 07; 11 Suppl 1(Suppl 1):S5. PubMed ID: 25080304
    [Abstract] [Full Text] [Related]

  • 8. MORO: a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks.
    Truong CD, Tran TD, Kwon YK.
    BMC Syst Biol; 2016 Dec 23; 10(Suppl 4):122. PubMed ID: 28155725
    [Abstract] [Full Text] [Related]

  • 9. Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.
    Dorier J, Crespo I, Niknejad A, Liechti R, Ebeling M, Xenarios I.
    BMC Bioinformatics; 2016 Oct 06; 17(1):410. PubMed ID: 27716031
    [Abstract] [Full Text] [Related]

  • 10. Integration of genomic information with biological networks using Cytoscape.
    Bauer-Mehren A.
    Methods Mol Biol; 2013 Oct 06; 1021():37-61. PubMed ID: 23715979
    [Abstract] [Full Text] [Related]

  • 11. CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks.
    Kittas A, Barozet A, Sereshti J, Grabe N, Tsoka S.
    BMC Syst Biol; 2015 Jul 11; 9():34. PubMed ID: 26163265
    [Abstract] [Full Text] [Related]

  • 12. Diversity of temporal correlations between genes in models of noisy and noiseless gene networks.
    Ribeiro AS, Lloyd-Price J, Chowdhury S, Yli-Harja O.
    Biosystems; 2011 Jul 11; 104(2-3):136-44. PubMed ID: 21356270
    [Abstract] [Full Text] [Related]

  • 13. Modeling stochasticity and robustness in gene regulatory networks.
    Garg A, Mohanram K, Di Cara A, De Micheli G, Xenarios I.
    Bioinformatics; 2009 Jun 15; 25(12):i101-9. PubMed ID: 19477975
    [Abstract] [Full Text] [Related]

  • 14. Boolean Dynamic Modeling Approaches to Study Plant Gene Regulatory Networks: Integration, Validation, and Prediction.
    Velderraín JD, Martínez-García JC, Álvarez-Buylla ER.
    Methods Mol Biol; 2017 Jun 15; 1629():297-315. PubMed ID: 28623593
    [Abstract] [Full Text] [Related]

  • 15. Asynchronous stochastic Boolean networks as gene network models.
    Zhu P, Han J.
    J Comput Biol; 2014 Oct 15; 21(10):771-83. PubMed ID: 24937230
    [Abstract] [Full Text] [Related]

  • 16. A dynamical model of genetic networks for cell differentiation.
    Villani M, Barbieri A, Serra R.
    PLoS One; 2011 Mar 18; 6(3):e17703. PubMed ID: 21464974
    [Abstract] [Full Text] [Related]

  • 17. Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.
    Mustafin ZS, Lashin SA, Matushkin YG, Gunbin KV, Afonnikov DA.
    BMC Bioinformatics; 2017 Jan 27; 18(Suppl 1):1427. PubMed ID: 28466792
    [Abstract] [Full Text] [Related]

  • 18. ViSiBooL-visualization and simulation of Boolean networks with temporal constraints.
    Schwab J, Burkovski A, Siegle L, Müssel C, Kestler HA.
    Bioinformatics; 2017 Feb 15; 33(4):601-604. PubMed ID: 27797768
    [Abstract] [Full Text] [Related]

  • 19. Employing decomposable partially observable Markov decision processes to control gene regulatory networks.
    Erdogdu U, Polat F, Alhajj R.
    Artif Intell Med; 2017 Nov 15; 83():14-34. PubMed ID: 28733120
    [Abstract] [Full Text] [Related]

  • 20. Automated Synthesis and Analysis of Switching Gene Regulatory Networks.
    Shavit Y, Yordanov B, Dunn SJ, Wintersteiger CM, Otani T, Hamadi Y, Livesey FJ, Kugler H.
    Biosystems; 2016 Aug 15; 146():26-34. PubMed ID: 27178783
    [Abstract] [Full Text] [Related]

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