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Journal Abstract Search

206 related items for PubMed ID: 26980280

  • 1. f-divergence cutoff index to simultaneously identify differential expression in the integrated transcriptome and proteome.
    Tang S, Hemberg M, Cansizoglu E, Belin S, Kosik K, Kreiman G, Steen H, Steen J.
    Nucleic Acids Res; 2016 Jun 02; 44(10):e97. PubMed ID: 26980280
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  • 4. Generating Sample-Specific Databases for Mass Spectrometry-Based Proteomic Analysis by Using RNA Sequencing.
    Luge T, Sauer S.
    Methods Mol Biol; 2016 Jun 02; 1394():219-232. PubMed ID: 26700052
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  • 5. Integrative Exploratory Analysis of Two or More Genomic Datasets.
    Meng C, Culhane A.
    Methods Mol Biol; 2016 Jun 02; 1418():19-38. PubMed ID: 27008008
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  • 7. Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project.
    Díez P, Droste C, Dégano RM, González-Muñoz M, Ibarrola N, Pérez-Andrés M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M.
    J Proteome Res; 2015 Sep 04; 14(9):3530-40. PubMed ID: 26216070
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  • 9. moCluster: Identifying Joint Patterns Across Multiple Omics Data Sets.
    Meng C, Helm D, Frejno M, Kuster B.
    J Proteome Res; 2016 Mar 04; 15(3):755-65. PubMed ID: 26653205
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  • 11. Differential correlation for sequencing data.
    Siska C, Kechris K.
    BMC Res Notes; 2017 Jan 19; 10(1):54. PubMed ID: 28103954
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  • 12. Identifying differentially expressed subnetworks with MMG.
    Noirel J, Sanguinetti G, Wright PC.
    Bioinformatics; 2008 Dec 01; 24(23):2792-3. PubMed ID: 18819939
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  • 13. Transcriptomic and Proteomic Data Integration and Two-Dimensional Molecular Maps with Regulatory and Functional Linkages: Application to Cell Proliferation and Invasion Networks in Glioblastoma.
    Gupta MK, Jayaram S, Reddy DN, Polisetty RV, Sirdeshmukh R.
    J Proteome Res; 2015 Dec 04; 14(12):5017-27. PubMed ID: 26464075
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  • 14. Tandem analysis of transcriptome and proteome changes after a single dose of corticosteroid: a systems approach to liver function in pharmacogenomics.
    Kamisoglu K, Sukumaran S, Nouri-Nigjeh E, Tu C, Li J, Shen X, Duan X, Qu J, Almon RR, DuBois DC, Jusko WJ, Androulakis IP.
    OMICS; 2015 Feb 04; 19(2):80-91. PubMed ID: 25611119
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  • 15. The use of open source bioinformatics tools to dissect transcriptomic data.
    Nitsche BM, Ram AF, Meyer V.
    Methods Mol Biol; 2012 Feb 04; 835():311-31. PubMed ID: 22183662
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  • 16. QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and Informatics.
    Kumar P, Panigrahi P, Johnson J, Weber WJ, Mehta S, Sajulga R, Easterly C, Crooker BA, Heydarian M, Anamika K, Griffin TJ, Jagtap PD.
    J Proteome Res; 2019 Feb 01; 18(2):782-790. PubMed ID: 30582332
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  • 17. Integrating multiple 'omics' analysis for microbial biology: application and methodologies.
    Zhang W, Li F, Nie L.
    Microbiology (Reading); 2010 Feb 01; 156(Pt 2):287-301. PubMed ID: 19910409
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  • 18. ROTS: An R package for reproducibility-optimized statistical testing.
    Suomi T, Seyednasrollah F, Jaakkola MK, Faux T, Elo LL.
    PLoS Comput Biol; 2017 May 01; 13(5):e1005562. PubMed ID: 28542205
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  • 19. An Accessible Proteogenomics Informatics Resource for Cancer Researchers.
    Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ.
    Cancer Res; 2017 Nov 01; 77(21):e43-e46. PubMed ID: 29092937
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  • 20. Using flux theory in dynamic omics data sets to identify differentially changing signals using DPoP.
    Edwards H, Zavorskas J, Huso W, Doan AG, Silbiger C, Harris S, Srivastava R, Marten MR.
    BMC Bioinformatics; 2024 Sep 27; 25(1):312. PubMed ID: 39333869
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