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72 related items for PubMed ID: 27471844

  • 1. Loop-driven conformational transition between the alternative and collapsed form of prethrombin-2: targeted molecular dynamics study.
    Wu S.
    J Biomol Struct Dyn; 2017 Jan; 35(1):119-127. PubMed ID: 27471844
    [Abstract] [Full Text] [Related]

  • 2. Do the crystallographic forms of prethrombin-2 revert to a single form in solution?
    Wu S, Shim JY, Lee CJ, Pedersen LG.
    Biophys Chem; 2015 Jan; 203-204():28-32. PubMed ID: 26025788
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  • 3. Crystal structure of prethrombin-1.
    Chen Z, Pelc LA, Di Cera E.
    Proc Natl Acad Sci U S A; 2010 Nov 09; 107(45):19278-83. PubMed ID: 20974933
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  • 4. Crystal structures of prethrombin-2 reveal alternative conformations under identical solution conditions and the mechanism of zymogen activation.
    Pozzi N, Chen Z, Zapata F, Pelc LA, Barranco-Medina S, Di Cera E.
    Biochemistry; 2011 Nov 29; 50(47):10195-202. PubMed ID: 22049947
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  • 5. [Investigation of interaction of thrombin-binding aptamer with thrombin and prethrombin-2 by simulation of molecular dynamics].
    Shcherbinin DS, Veselovsliĭ AV.
    Biofizika; 2013 Nov 29; 58(3):415-24. PubMed ID: 24159810
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  • 7. 19F NMR reveals the conformational properties of free thrombin and its zymogen precursor prethrombin-2.
    Ruben EA, Gandhi PS, Chen Z, Koester SK, DeKoster GT, Frieden C, Di Cera E.
    J Biol Chem; 2020 Jun 12; 295(24):8227-8235. PubMed ID: 32358061
    [Abstract] [Full Text] [Related]

  • 8. Conformational pathway for the kissing complex-->extended dimer transition of the SL1 stem-loop from genomic HIV-1 RNA as monitored by targeted molecular dynamics techniques.
    Aci S, Mazier S, Genest D.
    J Mol Biol; 2005 Aug 19; 351(3):520-30. PubMed ID: 16023135
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  • 10. Molecular dynamics simulations of certain mutant peptide models from staphylococcal nuclease reveal that initial hydrophobic collapse associated with turn propensity drives β-hairpin folding.
    Shukla RT, Kumar N, Sasidhar YU.
    J Pept Sci; 2013 Aug 19; 19(8):516-27. PubMed ID: 23794524
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  • 13. Crystal structure of prothrombin reveals conformational flexibility and mechanism of activation.
    Pozzi N, Chen Z, Gohara DW, Niu W, Heyduk T, Di Cera E.
    J Biol Chem; 2013 Aug 02; 288(31):22734-44. PubMed ID: 23775088
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  • 14. An experimentally robust model of monomeric apolipoprotein A-I created from a chimera of two X-ray structures and molecular dynamics simulations.
    Segrest JP, Jones MK, Shao B, Heinecke JW.
    Biochemistry; 2014 Dec 09; 53(48):7625-40. PubMed ID: 25423138
    [Abstract] [Full Text] [Related]

  • 15. Extending the capabilities of targeted molecular dynamics: simulation of a large conformational transition in plasminogen activator inhibitor 1.
    Krüger P, Verheyden S, Declerck PJ, Engelborghs Y.
    Protein Sci; 2001 Apr 09; 10(4):798-808. PubMed ID: 11274471
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  • 16. Molecular dynamics simulations of hydrophobic collapse of ubiquitin.
    Alonso DO, Daggett V.
    Protein Sci; 1998 Apr 09; 7(4):860-74. PubMed ID: 9568893
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  • 19. The co-crystal structure of unliganded bovine alpha-thrombin and prethrombin-2: movement of the Tyr-Pro-Pro-Trp segment and active site residues upon ligand binding.
    Malkowski MG, Martin PD, Guzik JC, Edwards BF.
    Protein Sci; 1997 Jul 09; 6(7):1438-48. PubMed ID: 9232645
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