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Journal Abstract Search

140 related items for PubMed ID: 2748581

  • 21. Conformation of tetragastrin in DMSO. Monte Carlo simulation taking account of solvent effects.
    Kuroda M, Yamazaki K, Taga T.
    Int J Pept Protein Res; 1994 Nov; 44(5):499-506. PubMed ID: 7896510
    [Abstract] [Full Text] [Related]

  • 22. Normal modes of vibration in bovine pancreatic trypsin inhibitor and its mechanical property.
    Nishikawa T, Go N.
    Proteins; 1987 Nov; 2(4):308-29. PubMed ID: 3448606
    [Abstract] [Full Text] [Related]

  • 23. Hybrid Monte Carlo with multidimensional replica exchanges: conformational equilibria of the hypervariable regions of a llama VHH antibody domain.
    Fenwick MK, Escobedo FA.
    Biopolymers; 2003 Feb; 68(2):160-77. PubMed ID: 12548621
    [Abstract] [Full Text] [Related]

  • 24. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
    Jackson RM, Gabb HA, Sternberg MJ.
    J Mol Biol; 1998 Feb 13; 276(1):265-85. PubMed ID: 9514726
    [Abstract] [Full Text] [Related]

  • 25. A method to configure protein side-chains from the main-chain trace in homology modelling.
    Eisenmenger F, Argos P, Abagyan R.
    J Mol Biol; 1993 Jun 05; 231(3):849-60. PubMed ID: 8515455
    [Abstract] [Full Text] [Related]

  • 26. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
    Vorobjev YN, Almagro JC, Hermans J.
    Proteins; 1998 Sep 01; 32(4):399-413. PubMed ID: 9726412
    [Abstract] [Full Text] [Related]

  • 27. Conformation spaces of proteins.
    Sullivan DC, Kuntz ID.
    Proteins; 2001 Mar 01; 42(4):495-511. PubMed ID: 11170204
    [Abstract] [Full Text] [Related]

  • 28. Deconstructing the native state: energy landscapes, function, and dynamics of globular proteins.
    Zhuravlev PI, Materese CK, Papoian GA.
    J Phys Chem B; 2009 Jul 02; 113(26):8800-12. PubMed ID: 19453123
    [Abstract] [Full Text] [Related]

  • 29. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential.
    Liu Z, Dominy BN, Shakhnovich EI.
    J Am Chem Soc; 2004 Jul 14; 126(27):8515-28. PubMed ID: 15238009
    [Abstract] [Full Text] [Related]

  • 30. Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins.
    Abagyan R, Totrov M.
    J Mol Biol; 1994 Jan 21; 235(3):983-1002. PubMed ID: 8289329
    [Abstract] [Full Text] [Related]

  • 31. Dynamics of the conformational ensemble of partially folded bovine pancreatic trypsin inhibitor.
    Barbar E, Hare M, Daragan V, Barany G, Woodward C.
    Biochemistry; 1998 May 26; 37(21):7822-33. PubMed ID: 9601043
    [Abstract] [Full Text] [Related]

  • 32. Determining minimum energy conformations of polypeptides by dynamic programming.
    Vajda S, Delisi C.
    Biopolymers; 1990 Dec 26; 29(14):1755-72. PubMed ID: 2207285
    [Abstract] [Full Text] [Related]

  • 33. A refined model of the thyrotropin-releasing hormone (TRH) receptor binding pocket. Novel mixed mode Monte Carlo/stochastic dynamics simulations of the complex between TRH and TRH receptor.
    Laakkonen LJ, Guarnieri F, Perlman JH, Gershengorn MC, Osman R.
    Biochemistry; 1996 Jun 18; 35(24):7651-63. PubMed ID: 8672466
    [Abstract] [Full Text] [Related]

  • 34. Application of the multiensemble sampling to the equilibrium folding of proteins.
    Son HS, Kim SY, Lee J, Han KK.
    Bioinformatics; 2006 Aug 01; 22(15):1832-7. PubMed ID: 16766555
    [Abstract] [Full Text] [Related]

  • 35. Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.
    Gautier R, Tufféry P.
    J Comput Chem; 2003 Nov 30; 24(15):1950-61. PubMed ID: 14515377
    [Abstract] [Full Text] [Related]

  • 36. Folding simulations of small proteins.
    Kim SY, Lee J, Lee J.
    Biophys Chem; 2005 Apr 01; 115(2-3):195-200. PubMed ID: 15752604
    [Abstract] [Full Text] [Related]

  • 37. Disaccharide conformational flexibility. II. Molecular dynamics simulations of sucrose.
    Tran VH, Brady JW.
    Biopolymers; 1990 Apr 01; 29(6-7):977-97. PubMed ID: 2369625
    [Abstract] [Full Text] [Related]

  • 38. Importance of chirality and reduced flexibility of protein side chains: a study with square and tetrahedral lattice models.
    Zhang J, Chen Y, Chen R, Liang J.
    J Chem Phys; 2004 Jul 01; 121(1):592-603. PubMed ID: 15260581
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  • 39. [A turning point in the knowledge of the structure-function-activity relations of elastin].
    Alix AJ.
    J Soc Biol; 2001 Jul 01; 195(2):181-93. PubMed ID: 11727705
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  • 40. Conformational dynamics of cytochrome c: correlation to hydrogen exchange.
    García AE, Hummer G.
    Proteins; 1999 Aug 01; 36(2):175-91. PubMed ID: 10398365
    [Abstract] [Full Text] [Related]

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