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2. The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data. Ambrosini G, Dreos R, Kumar S, Bucher P. BMC Genomics; 2016 Nov 18; 17(1):938. PubMed ID: 27863463 [Abstract] [Full Text] [Related]
5. A map of direct TF-DNA interactions in the human genome. Gheorghe M, Sandve GK, Khan A, Chèneby J, Ballester B, Mathelier A. Nucleic Acids Res; 2019 Feb 28; 47(4):e21. PubMed ID: 30517703 [Abstract] [Full Text] [Related]
8. SignalSpider: probabilistic pattern discovery on multiple normalized ChIP-Seq signal profiles. Wong KC, Li Y, Peng C, Zhang Z. Bioinformatics; 2015 Jan 01; 31(1):17-24. PubMed ID: 25192742 [Abstract] [Full Text] [Related]
9. ChIPseek, a web-based analysis tool for ChIP data. Chen TW, Li HP, Lee CC, Gan RC, Huang PJ, Wu TH, Lee CY, Chang YF, Tang P. BMC Genomics; 2014 Jun 30; 15(1):539. PubMed ID: 24974934 [Abstract] [Full Text] [Related]
10. TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles. Cheng C, Min R, Gerstein M. Bioinformatics; 2011 Dec 01; 27(23):3221-7. PubMed ID: 22039215 [Abstract] [Full Text] [Related]
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15. CASSys: an integrated software-system for the interactive analysis of ChIP-seq data. Alawi M, Kurtz S, Beckstette M. J Integr Bioinform; 2011 Jun 21; 8(2):155. PubMed ID: 21690655 [Abstract] [Full Text] [Related]