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320 related items for PubMed ID: 27552235
1. Multiscale Quantum Mechanics/Molecular Mechanics Simulations with Neural Networks. Shen L, Wu J, Yang W. J Chem Theory Comput; 2016 Oct 11; 12(10):4934-4946. PubMed ID: 27552235 [Abstract] [Full Text] [Related]
5. QM/MM Minimum Free Energy Path: Methodology and Application to Triosephosphate Isomerase. Hu H, Lu Z, Yang W. J Chem Theory Comput; 2007 Mar 11; 3(2):390-406. PubMed ID: 19079734 [Abstract] [Full Text] [Related]
7. Development and application of ab initio QM/MM methods for mechanistic simulation of reactions in solution and in enzymes. Hu H, Yang W. Theochem; 2009 Mar 30; 898(1-3):17-30. PubMed ID: 24146439 [Abstract] [Full Text] [Related]
10. Quantum mechanics/molecular mechanics minimum free-energy path for accurate reaction energetics in solution and enzymes: sequential sampling and optimization on the potential of mean force surface. Hu H, Lu Z, Parks JM, Burger SK, Yang W. J Chem Phys; 2008 Jan 21; 128(3):034105. PubMed ID: 18205486 [Abstract] [Full Text] [Related]
12. Accelerating Ab Initio Quantum Mechanical and Molecular Mechanical (QM/MM) Molecular Dynamics Simulations with Multiple Time Step Integration and a Recalibrated Semiempirical QM/MM Hamiltonian. Pan X, Van R, Epifanovsky E, Liu J, Pu J, Nam K, Shao Y. J Phys Chem B; 2022 Jun 02. PubMed ID: 35653199 [Abstract] [Full Text] [Related]
14. Application of a BOSS-Gaussian interface for QM/MM simulations of Henry and methyl transfer reactions. Vilseck JZ, Kostal J, Tirado-Rives J, Jorgensen WL. J Comput Chem; 2015 Oct 15; 36(27):2064-74. PubMed ID: 26311531 [Abstract] [Full Text] [Related]
16. Comparison of linear-scaling semiempirical methods and combined quantum mechanical/molecular mechanical methods for enzymic reactions. II. An energy decomposition analysis. Titmuss SJ, Cummins PL, Rendell AP, Bliznyuk AA, Gready JE. J Comput Chem; 2002 Nov 15; 23(14):1314-22. PubMed ID: 12214314 [Abstract] [Full Text] [Related]
17. Acceleration of Ab Initio QM/MM Calculations under Periodic Boundary Conditions by Multiscale and Multiple Time Step Approaches. Nam K. J Chem Theory Comput; 2014 Oct 14; 10(10):4175-83. PubMed ID: 26588116 [Abstract] [Full Text] [Related]