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Journal Abstract Search

206 related items for PubMed ID: 27587674

  • 1. Optimization of signal-to-noise ratio for efficient microarray probe design.
    Matveeva OV, Nechipurenko YD, Riabenko E, Ragan C, Nazipova NN, Ogurtsov AY, Shabalina SA.
    Bioinformatics; 2016 Sep 01; 32(17):i552-i558. PubMed ID: 27587674
    [Abstract] [Full Text] [Related]

  • 2. Sequence characteristics define trade-offs between on-target and genome-wide off-target hybridization of oligoprobes.
    Matveeva OV, Ogurtsov AY, Nazipova NN, Shabalina SA.
    PLoS One; 2018 Sep 01; 13(6):e0199162. PubMed ID: 29928000
    [Abstract] [Full Text] [Related]

  • 3. A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus.
    Charbonnier Y, Gettler B, François P, Bento M, Renzoni A, Vaudaux P, Schlegel W, Schrenzel J.
    BMC Genomics; 2005 Jun 17; 6():95. PubMed ID: 15963225
    [Abstract] [Full Text] [Related]

  • 4. Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray.
    Lee I, Dombkowski AA, Athey BD.
    Nucleic Acids Res; 2004 Jun 17; 32(2):681-90. PubMed ID: 14757833
    [Abstract] [Full Text] [Related]

  • 5. Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.
    Gong P, Pirooznia M, Guan X, Perkins EJ.
    PLoS One; 2010 Dec 08; 5(12):e14266. PubMed ID: 21170345
    [Abstract] [Full Text] [Related]

  • 6. UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/genomic level.
    Chen SH, Lo CZ, Su SY, Kuo BH, Hsiung CA, Lin CY.
    BMC Genomics; 2010 Dec 02; 11 Suppl 4(Suppl 4):S6. PubMed ID: 21143815
    [Abstract] [Full Text] [Related]

  • 7. Secondary structure in the target as a confounding factor in synthetic oligomer microarray design.
    Ratushna VG, Weller JW, Gibas CJ.
    BMC Genomics; 2005 Mar 08; 6():31. PubMed ID: 15755320
    [Abstract] [Full Text] [Related]

  • 8. A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization.
    Talla E, Tekaia F, Brino L, Dujon B.
    BMC Genomics; 2003 Sep 22; 4(1):38. PubMed ID: 14499002
    [Abstract] [Full Text] [Related]

  • 9. Low density DNA microarray for detection of most frequent TP53 missense point mutations.
    Rangel-López A, Maldonado-Rodríguez R, Salcedo-Vargas M, Espinosa-Lara JM, Méndez-Tenorio A, Beattie KL.
    BMC Biotechnol; 2005 Feb 15; 5():8. PubMed ID: 15713227
    [Abstract] [Full Text] [Related]

  • 10. Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays.
    Suzuki S, Ono N, Furusawa C, Kashiwagi A, Yomo T.
    BMC Genomics; 2007 Oct 16; 8():373. PubMed ID: 17939865
    [Abstract] [Full Text] [Related]

  • 11. Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
    Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.
    BMC Bioinformatics; 2005 Apr 25; 6():107. PubMed ID: 15850491
    [Abstract] [Full Text] [Related]

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  • 14. High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations.
    Wallace JC, Korth MJ, Paeper B, Proll SC, Thomas MJ, Magness CL, Iadonato SP, Nelson C, Katze MG.
    BMC Genomics; 2007 Jan 23; 8():28. PubMed ID: 17244361
    [Abstract] [Full Text] [Related]

  • 15. Single Copy Oligonucleotide Fluorescence In Situ Hybridization Probe Design Platforms: Development, Application and Evaluation.
    Liu G, Zhang T.
    Int J Mol Sci; 2021 Jul 01; 22(13):. PubMed ID: 34281175
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  • 17. An information theoretic method of microarray probe design for genome classification.
    Garbarine E, Rosen G.
    Annu Int Conf IEEE Eng Med Biol Soc; 2008 Jul 01; 2008():3779-82. PubMed ID: 19163534
    [Abstract] [Full Text] [Related]

  • 18. In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology.
    Grigoryev DN, Ma SF, Simon BA, Irizarry RA, Ye SQ, Garcia JG.
    BMC Genomics; 2005 May 04; 6():62. PubMed ID: 15871745
    [Abstract] [Full Text] [Related]

  • 19. Selecting oligonucleotide probes for whole-genome tiling arrays with a cross-hybridization potential.
    Hafemeister C, Krause R, Schliep A.
    IEEE/ACM Trans Comput Biol Bioinform; 2011 May 04; 8(6):1642-52. PubMed ID: 21358006
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