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115 related items for PubMed ID: 27680513

  • 1. Simulation study of the ability of a computationally-designed peptide to recognize target tRNALys3 and other decoy tRNAs.
    Xiao X, Zhao B, Agris PF, Hall CK.
    Protein Sci; 2016 Dec; 25(12):2243-2255. PubMed ID: 27680513
    [Abstract] [Full Text] [Related]

  • 2. Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA.
    Eshete M, Marchbank MT, Deutscher SL, Sproat B, Leszczynska G, Malkiewicz A, Agris PF.
    Protein J; 2007 Jan; 26(1):61-73. PubMed ID: 17237992
    [Abstract] [Full Text] [Related]

  • 3. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 4. Molecular recognition mechanism of peptide chain bound to the tRNA(Lys3) anticodon loop in silico.
    Xiao X, Agris PF, Hall CK.
    J Biomol Struct Dyn; 2015 Jun 07; 33(1):14-27. PubMed ID: 24417415
    [Abstract] [Full Text] [Related]

  • 5. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.
    Vendeix FA, Murphy FV, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.
    J Mol Biol; 2012 Mar 02; 416(4):467-85. PubMed ID: 22227389
    [Abstract] [Full Text] [Related]

  • 6. Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.
    Sonawane KD, Kamble AS, Fandilolu PM.
    J Biomol Struct Dyn; 2018 Dec 02; 36(16):4182-4196. PubMed ID: 29243556
    [Abstract] [Full Text] [Related]

  • 7. Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.
    Sundaram M, Durant PC, Davis DR.
    Biochemistry; 2000 Oct 17; 39(41):12575-84. PubMed ID: 11027137
    [Abstract] [Full Text] [Related]

  • 8. Probing the influence of hypermodified residues within the tRNA3(Lys) anticodon stem loop interacting with the A-loop primer sequence from HIV-1.
    Galindo-Murillo R, Davis DR, Cheatham TE.
    Biochim Biophys Acta; 2016 Mar 17; 1860(3):607-17. PubMed ID: 26655694
    [Abstract] [Full Text] [Related]

  • 9. Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
    Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13396-404. PubMed ID: 11063577
    [Abstract] [Full Text] [Related]

  • 10. Functional recognition of the modified human tRNALys3(UUU) anticodon domain by HIV's nucleocapsid protein and a peptide mimic.
    Graham WD, Barley-Maloney L, Stark CJ, Kaur A, Stolarchuk C, Sproat B, Leszczynska G, Malkiewicz A, Safwat N, Mucha P, Guenther R, Agris PF.
    J Mol Biol; 2011 Jul 22; 410(4):698-715. PubMed ID: 21762809
    [Abstract] [Full Text] [Related]

  • 11. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
    Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13390-5. PubMed ID: 11063576
    [Abstract] [Full Text] [Related]

  • 12. Physical Chemistry of a Single tRNA-Modified Nucleoside Regulates Decoding of the Synonymous Lysine Wobble Codon and Affects Type 2 Diabetes.
    Vangaveti S, Ranganathan SV, Agris PF.
    J Phys Chem B; 2022 Feb 17; 126(6):1168-1177. PubMed ID: 35119848
    [Abstract] [Full Text] [Related]

  • 13. Introducing folding stability into the score function for computational design of RNA-binding peptides boosts the probability of success.
    Xiao X, Agris PF, Hall CK.
    Proteins; 2016 May 17; 84(5):700-11. PubMed ID: 26914059
    [Abstract] [Full Text] [Related]

  • 14. Structural features of tRNALys favored by anticodon nuclease as inferred from reactivities of anticodon stem and loop substrate analogs.
    Jiang Y, Blanga S, Amitsur M, Meidler R, Krivosheyev E, Sundaram M, Bajji AC, Davis DR, Kaufmann G.
    J Biol Chem; 2002 Feb 08; 277(6):3836-41. PubMed ID: 11723135
    [Abstract] [Full Text] [Related]

  • 15. The design of a peptide sequence to inhibit HIV replication: a search algorithm combining Monte Carlo and self-consistent mean field techniques.
    Xiao X, Hall CK, Agris PF.
    J Biomol Struct Dyn; 2014 Feb 08; 32(10):1523-36. PubMed ID: 24147736
    [Abstract] [Full Text] [Related]

  • 16. Unconventional structure of tRNA(Lys)SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1.
    Agris PF, Guenther R, Ingram PC, Basti MM, Stuart JW, Sochacka E, Malkiewicz A.
    RNA; 1997 Apr 08; 3(4):420-8. PubMed ID: 9085848
    [Abstract] [Full Text] [Related]

  • 17. tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast.
    Klassen R, Ciftci A, Funk J, Bruch A, Butter F, Schaffrath R.
    Nucleic Acids Res; 2016 Dec 15; 44(22):10946-10959. PubMed ID: 27496282
    [Abstract] [Full Text] [Related]

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  • 19. The role of modifications in codon discrimination by tRNA(Lys)UUU.
    Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF.
    Nat Struct Mol Biol; 2004 Dec 15; 11(12):1186-91. PubMed ID: 15558052
    [Abstract] [Full Text] [Related]

  • 20. Amino acid signature enables proteins to recognize modified tRNA.
    Spears JL, Xiao X, Hall CK, Agris PF.
    Biochemistry; 2014 Feb 25; 53(7):1125-33. PubMed ID: 24483944
    [Abstract] [Full Text] [Related]

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