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Journal Abstract Search

348 related items for PubMed ID: 27766961

  • 1. VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.
    Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, Scarborough W, Scott JK, Uduman M, Vander Heiden JA, Scheuermann RH, Monson N, Kleinstein SH, Cowell LG.
    BMC Bioinformatics; 2016 Oct 06; 17(Suppl 13):333. PubMed ID: 27766961
    [Abstract] [Full Text] [Related]

  • 2. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.
    Christley S, Scarborough W, Salinas E, Rounds WH, Toby IT, Fonner JM, Levin MK, Kim M, Mock SA, Jordan C, Ostmeyer J, Buntzman A, Rubelt F, Davila ML, Monson NL, Scheuermann RH, Cowell LG.
    Front Immunol; 2018 Oct 06; 9():976. PubMed ID: 29867956
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  • 3. IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.
    Alamyar E, Duroux P, Lefranc MP, Giudicelli V.
    Methods Mol Biol; 2012 Oct 06; 882():569-604. PubMed ID: 22665256
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  • 4. Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.
    Gadala-Maria D, Yaari G, Uduman M, Kleinstein SH.
    Proc Natl Acad Sci U S A; 2015 Feb 24; 112(8):E862-70. PubMed ID: 25675496
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  • 6. Analysis of Transcriptional Profiling of Immune Cells at the Single-Cell Level.
    Ferguson A, Chen K.
    Methods Mol Biol; 2020 Feb 24; 2111():47-57. PubMed ID: 31933197
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  • 13. IRProfiler - a software toolbox for high throughput immune receptor profiling.
    Maramis C, Gkoufas A, Vardi A, Stalika E, Stamatopoulos K, Hatzidimitriou A, Maglaveras N, Chouvarda I.
    BMC Bioinformatics; 2018 Apr 18; 19(1):144. PubMed ID: 29669518
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  • 17. Immune Repertoire Analysis on High-Performance Computing Using VDJServer V1: A Method by the AIRR Community.
    Christley S, Stervbo U, Cowell LG, AIRR Community.
    Methods Mol Biol; 2022 Apr 18; 2453():439-446. PubMed ID: 35622338
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  • 18. VDJbase: an adaptive immune receptor genotype and haplotype database.
    Omer A, Shemesh O, Peres A, Polak P, Shepherd AJ, Watson CT, Boyd SD, Collins AM, Lees W, Yaari G.
    Nucleic Acids Res; 2020 Jan 08; 48(D1):D1051-D1056. PubMed ID: 31602484
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