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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

178 related items for PubMed ID: 27896971

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  • 2. From the desktop to the grid: scalable bioinformatics via workflow conversion.
    de la Garza L, Veit J, Szolek A, Röttig M, Aiche S, Gesing S, Reinert K, Kohlbacher O.
    BMC Bioinformatics; 2016 Mar 12; 17():127. PubMed ID: 26968893
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  • 3. Watchdog - a workflow management system for the distributed analysis of large-scale experimental data.
    Kluge M, Friedel CC.
    BMC Bioinformatics; 2018 Mar 13; 19(1):97. PubMed ID: 29534677
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  • 7. Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution.
    Kluge M, Friedl MS, Menzel AL, Friedel CC.
    Gigascience; 2020 Jun 01; 9(6):. PubMed ID: 32556167
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  • 8. The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols.
    Yuen D, Cabansay L, Duncan A, Luu G, Hogue G, Overbeck C, Perez N, Shands W, Steinberg D, Reid C, Olunwa N, Hansen R, Sheets E, O'Farrell A, Cullion K, O'Connor BD, Paten B, Stein L.
    Nucleic Acids Res; 2021 Jul 02; 49(W1):W624-W632. PubMed ID: 33978761
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  • 9. Conveyor: a workflow engine for bioinformatic analyses.
    Linke B, Giegerich R, Goesmann A.
    Bioinformatics; 2011 Apr 01; 27(7):903-11. PubMed ID: 21278189
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  • 11. Investigating reproducibility and tracking provenance - A genomic workflow case study.
    Kanwal S, Khan FZ, Lonie A, Sinnott RO.
    BMC Bioinformatics; 2017 Jul 12; 18(1):337. PubMed ID: 28701218
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  • 12. Using prototyping to choose a bioinformatics workflow management system.
    Jackson M, Kavoussanakis K, Wallace EWJ.
    PLoS Comput Biol; 2021 Feb 12; 17(2):e1008622. PubMed ID: 33630841
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  • 14. A qualitative assessment of using ChatGPT as large language model for scientific workflow development.
    Sänger M, De Mecquenem N, Lewińska KE, Bountris V, Lehmann F, Leser U, Kosch T.
    Gigascience; 2024 Jan 02; 13():. PubMed ID: 38896539
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  • 15. Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy.
    de la Rosa-Trevín JM, Quintana A, Del Cano L, Zaldívar A, Foche I, Gutiérrez J, Gómez-Blanco J, Burguet-Castell J, Cuenca-Alba J, Abrishami V, Vargas J, Otón J, Sharov G, Vilas JL, Navas J, Conesa P, Kazemi M, Marabini R, Sorzano CO, Carazo JM.
    J Struct Biol; 2016 Jul 02; 195(1):93-9. PubMed ID: 27108186
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  • 16. Design considerations for workflow management systems use in production genomics research and the clinic.
    Ahmed AE, Allen JM, Bhat T, Burra P, Fliege CE, Hart SN, Heldenbrand JR, Hudson ME, Istanto DD, Kalmbach MT, Kapraun GD, Kendig KI, Kendzior MC, Klee EW, Mattson N, Ross CA, Sharif SM, Venkatakrishnan R, Fadlelmola FM, Mainzer LS.
    Sci Rep; 2021 Nov 04; 11(1):21680. PubMed ID: 34737383
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  • 17. System for Quality-Assured Data Analysis: Flexible, reproducible scientific workflows.
    Fowler J, San Lucas FA, Scheet P.
    Genet Epidemiol; 2019 Mar 04; 43(2):227-237. PubMed ID: 30565316
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  • 18. Utility of the Python package Geoweaver_cwl for improving workflow reusability: an illustration with multidisciplinary use cases.
    Kale A, Sun Z, Ma X.
    Earth Sci Inform; 2023 Mar 04; 16(3):2955-2961. PubMed ID: 37636584
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  • 19. Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry.
    Aiche S, Sachsenberg T, Kenar E, Walzer M, Wiswedel B, Kristl T, Boyles M, Duschl A, Huber CG, Berthold MR, Reinert K, Kohlbacher O.
    Proteomics; 2015 Apr 04; 15(8):1443-7. PubMed ID: 25604327
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  • 20. Script of Scripts: A pragmatic workflow system for daily computational research.
    Wang G, Peng B.
    PLoS Comput Biol; 2019 Feb 04; 15(2):e1006843. PubMed ID: 30811390
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