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150 related items for PubMed ID: 27967143

  • 1. Characterizing folding funnels with replica exchange Wang-Landau simulation of lattice proteins.
    Shi G, Wüst T, Landau DP.
    Phys Rev E; 2016 Nov; 94(5-1):050402. PubMed ID: 27967143
    [Abstract] [Full Text] [Related]

  • 2. Elucidating thermal behavior, native contacts, and folding funnels of simple lattice proteins using replica exchange Wang-Landau sampling.
    Shi G, Wüst T, Landau DP.
    J Chem Phys; 2018 Oct 28; 149(16):164913. PubMed ID: 30384708
    [Abstract] [Full Text] [Related]

  • 3. Effects of lattice constraints in coarse-grained protein models.
    Farris ACK, Seaton DT, Landau DP.
    J Chem Phys; 2021 Feb 28; 154(8):084903. PubMed ID: 33639740
    [Abstract] [Full Text] [Related]

  • 4. Effect of single-site mutations on hydrophobic-polar lattice proteins.
    Shi G, Vogel T, Wüst T, Li YW, Landau DP.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2014 Sep 28; 90(3):033307. PubMed ID: 25314564
    [Abstract] [Full Text] [Related]

  • 5. The role of chain-stiffness in lattice protein models: A replica-exchange Wang-Landau study.
    Farris ACK, Shi G, Wüst T, Landau DP.
    J Chem Phys; 2018 Sep 28; 149(12):125101. PubMed ID: 30278675
    [Abstract] [Full Text] [Related]

  • 6. Optimized Wang-Landau sampling of lattice polymers: ground state search and folding thermodynamics of HP model proteins.
    Wüst T, Landau DP.
    J Chem Phys; 2012 Aug 14; 137(6):064903. PubMed ID: 22897307
    [Abstract] [Full Text] [Related]

  • 7. Wang-Landau sampling in face-centered-cubic hydrophobic-hydrophilic lattice model proteins.
    Liu J, Song B, Yao Y, Xue Y, Liu W, Liu Z.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2014 Oct 14; 90(4):042715. PubMed ID: 25375531
    [Abstract] [Full Text] [Related]

  • 8. Generic folding and transition hierarchies for surface adsorption of hydrophobic-polar lattice model proteins.
    Li YW, Wüst T, Landau DP.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2013 Jan 14; 87(1):012706. PubMed ID: 23410358
    [Abstract] [Full Text] [Related]

  • 9. Enhanced Wang Landau sampling of adsorbed protein conformations.
    Radhakrishna M, Sharma S, Kumar SK.
    J Chem Phys; 2012 Mar 21; 136(11):114114. PubMed ID: 22443755
    [Abstract] [Full Text] [Related]

  • 10. Identification of characteristic protein folding channels in a coarse-grained hydrophobic-polar peptide model.
    Schnabel S, Bachmann M, Janke W.
    J Chem Phys; 2007 Mar 14; 126(10):105102. PubMed ID: 17362088
    [Abstract] [Full Text] [Related]

  • 11. Two-state folding, folding through intermediates, and metastability in a minimalistic hydrophobic-polar model for proteins.
    Schnabel S, Bachmann M, Janke W.
    Phys Rev Lett; 2007 Jan 26; 98(4):048103. PubMed ID: 17358817
    [Abstract] [Full Text] [Related]

  • 12. Thermodynamics of hydrophobic-polar model proteins on the face-centered cubic lattice.
    Wilson MS, Landau DP.
    Phys Rev E; 2021 Aug 26; 104(2-2):025303. PubMed ID: 34525583
    [Abstract] [Full Text] [Related]

  • 13. A study of density of states and ground states in hydrophobic-hydrophilic protein folding models by equi-energy sampling.
    Kou SC, Oh J, Wong WH.
    J Chem Phys; 2006 Jun 28; 124(24):244903. PubMed ID: 16821999
    [Abstract] [Full Text] [Related]

  • 14. Improving coarse-grained models of protein folding through weighting of polar-polar/hydrophobic-hydrophobic interactions into crowded spaces.
    Beltrán HI, Alas-Guardado SJ, González-Pérez PP.
    J Mol Model; 2022 Mar 09; 28(4):87. PubMed ID: 35262807
    [Abstract] [Full Text] [Related]

  • 15. The effect of surface tethering on the folding of the src-SH3 protein domain.
    Zhuang Z, Jewett AI, Soto P, Shea JE.
    Phys Biol; 2009 Feb 10; 6(1):015004. PubMed ID: 19208934
    [Abstract] [Full Text] [Related]

  • 16. Entropy reduction effect imposed by hydrogen bond formation on protein folding cooperativity: evidence from a hydrophobic minimalist model.
    Barbosa MA, Garcia LG, Pereira de Araújo AF.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Nov 10; 72(5 Pt 1):051903. PubMed ID: 16383641
    [Abstract] [Full Text] [Related]

  • 17. Finding multiple minimum-energy conformations of the hydrophobic-polar protein model via multidomain sampling.
    Tang W, Zhou Q.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2012 Sep 10; 86(3 Pt 1):031909. PubMed ID: 23030946
    [Abstract] [Full Text] [Related]

  • 18. Folding simulations of a three-dimensional protein model with a nonspecific hydrophobic energy function.
    Garcia LG, Treptow WL, de Araújo AF.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2001 Jul 10; 64(1 Pt 1):011912. PubMed ID: 11461293
    [Abstract] [Full Text] [Related]

  • 19. Designability and cooperative folding in a four-letter hydrophobic-polar model of proteins.
    Liu HG, Tang LH.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Nov 10; 74(5 Pt 1):051918. PubMed ID: 17279950
    [Abstract] [Full Text] [Related]

  • 20. Dissociation aided and side chain sampling enhanced Hamiltonian replica exchange.
    Mu Y.
    J Chem Phys; 2009 Apr 28; 130(16):164107. PubMed ID: 19405561
    [Abstract] [Full Text] [Related]

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