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Journal Abstract Search

1326 related items for PubMed ID: 28109256

  • 1. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
    Castelino M, Eyre S, Moat J, Fox G, Martin P, Ho P, Upton M, Barton A.
    BMC Microbiol; 2017 Jan 21; 17(1):23. PubMed ID: 28109256
    [Abstract] [Full Text] [Related]

  • 2. The skin microbiome in psoriatic arthritis: methodology development and pilot data.
    Castelino M, Eyre S, Moat J, Fox G, Martin P, Ijaz U, Quince C, Ho P, Upton M, Barton A.
    Lancet; 2015 Feb 26; 385 Suppl 1():S27. PubMed ID: 26312849
    [Abstract] [Full Text] [Related]

  • 3. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A, Sanyal A, Perez GF, Colberg-Poley AM, Campos J, Rose MC, Pérez-Losada M.
    J Microbiol Methods; 2016 Nov 26; 130():95-99. PubMed ID: 27609714
    [Abstract] [Full Text] [Related]

  • 4. 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform.
    Fouhy F, Clooney AG, Stanton C, Claesson MJ, Cotter PD.
    BMC Microbiol; 2016 Jun 24; 16(1):123. PubMed ID: 27342980
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  • 6. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
    Allali I, Arnold JW, Roach J, Cadenas MB, Butz N, Hassan HM, Koci M, Ballou A, Mendoza M, Ali R, Azcarate-Peril MA.
    BMC Microbiol; 2017 Sep 13; 17(1):194. PubMed ID: 28903732
    [Abstract] [Full Text] [Related]

  • 7. Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.
    Allen HK, Bayles DO, Looft T, Trachsel J, Bass BE, Alt DP, Bearson SM, Nicholson T, Casey TA.
    BMC Res Notes; 2016 Aug 02; 9():380. PubMed ID: 27485508
    [Abstract] [Full Text] [Related]

  • 8. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
    Ogier JC, Pagès S, Galan M, Barret M, Gaudriault S.
    BMC Microbiol; 2019 Jul 29; 19(1):171. PubMed ID: 31357928
    [Abstract] [Full Text] [Related]

  • 9. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
    Heikema AP, Horst-Kreft D, Boers SA, Jansen R, Hiltemann SD, de Koning W, Kraaij R, de Ridder MAJ, van Houten CB, Bont LJ, Stubbs AP, Hays JP.
    Genes (Basel); 2020 Sep 21; 11(9):. PubMed ID: 32967250
    [Abstract] [Full Text] [Related]

  • 10. An extended single-index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms.
    Derakhshani H, Tun HM, Khafipour E.
    J Basic Microbiol; 2016 Mar 21; 56(3):321-6. PubMed ID: 26426811
    [Abstract] [Full Text] [Related]

  • 11. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
    Myer PR, Kim M, Freetly HC, Smith TPL.
    J Microbiol Methods; 2016 Aug 21; 127():132-140. PubMed ID: 27282101
    [Abstract] [Full Text] [Related]

  • 12. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
    Abellan-Schneyder I, Matchado MS, Reitmeier S, Sommer A, Sewald Z, Baumbach J, List M, Neuhaus K.
    mSphere; 2021 Feb 24; 6(1):. PubMed ID: 33627512
    [Abstract] [Full Text] [Related]

  • 13. A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform.
    Pichler M, Coskun ÖK, Ortega-Arbulú AS, Conci N, Wörheide G, Vargas S, Orsi WD.
    Microbiologyopen; 2018 Dec 24; 7(6):e00611. PubMed ID: 29575567
    [Abstract] [Full Text] [Related]

  • 14. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
    Wagner J, Coupland P, Browne HP, Lawley TD, Francis SC, Parkhill J.
    BMC Microbiol; 2016 Nov 14; 16(1):274. PubMed ID: 27842515
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  • 16. Comparison of iSeq and MiSeq as the two platforms for 16S rRNA sequencing in the study of the gut of rat microbiome.
    Salamon D, Zapała B, Krawczyk A, Potasiewicz A, Nikiforuk A, Stój A, Gosiewski T.
    Appl Microbiol Biotechnol; 2022 Nov 14; 106(22):7671-7681. PubMed ID: 36322250
    [Abstract] [Full Text] [Related]

  • 17. In Silico and Experimental Evaluation of Primer Sets for Species-Level Resolution of the Vaginal Microbiota Using 16S Ribosomal RNA Gene Sequencing.
    Van Der Pol WJ, Kumar R, Morrow CD, Blanchard EE, Taylor CM, Martin DH, Lefkowitz EJ, Muzny CA.
    J Infect Dis; 2019 Jan 07; 219(2):305-314. PubMed ID: 30535155
    [Abstract] [Full Text] [Related]

  • 18. A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities.
    Schriefer AE, Cliften PF, Hibberd MC, Sawyer C, Brown-Kennerly V, Burcea L, Klotz E, Crosby SD, Gordon JI, Head RD.
    J Microbiol Methods; 2018 Nov 07; 154():6-13. PubMed ID: 30273610
    [Abstract] [Full Text] [Related]

  • 19. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
    Walsh AM, Crispie F, O'Sullivan O, Finnegan L, Claesson MJ, Cotter PD.
    Microbiome; 2018 Mar 20; 6(1):50. PubMed ID: 29554948
    [Abstract] [Full Text] [Related]

  • 20. Comparison of the full-length sequence and sub-regions of 16S rRNA gene for skin microbiome profiling.
    Zhang H, Wang X, Chen A, Li S, Tao R, Chen K, Huang P, Li L, Huang J, Li C, Zhang S.
    mSystems; 2024 Jul 23; 9(7):e0039924. PubMed ID: 38934545
    [Abstract] [Full Text] [Related]

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