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Journal Abstract Search

206 related items for PubMed ID: 28291762

  • 21. Ongoing developments in CCP4 for high-throughput structure determination.
    Winn MD, Ashton AW, Briggs PJ, Ballard CC, Patel P.
    Acta Crystallogr D Biol Crystallogr; 2002 Nov; 58(Pt 11):1929-36. PubMed ID: 12393924
    [Abstract] [Full Text] [Related]

  • 22. Efficient virtual screening using multiple protein conformations described as negative images of the ligand-binding site.
    Virtanen SI, Pentikäinen OT.
    J Chem Inf Model; 2010 Jun 28; 50(6):1005-11. PubMed ID: 20504004
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  • 23. Recent developments in the PHENIX software for automated crystallographic structure determination.
    Adams PD, Gopal K, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Pai RK, Read RJ, Romo TD, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC.
    J Synchrotron Radiat; 2004 Jan 01; 11(Pt 1):53-5. PubMed ID: 14646133
    [Abstract] [Full Text] [Related]

  • 24. PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes.
    Gore SP, Burke DF, Blundell TL.
    Bioinformatics; 2005 Aug 01; 21(15):3316-7. PubMed ID: 15932902
    [Abstract] [Full Text] [Related]

  • 25. MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.
    Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.
    BMC Bioinformatics; 2006 Oct 17; 7():459. PubMed ID: 17044936
    [Abstract] [Full Text] [Related]

  • 26. affylmGUI: a graphical user interface for linear modeling of single channel microarray data.
    Wettenhall JM, Simpson KM, Satterley K, Smyth GK.
    Bioinformatics; 2006 Apr 01; 22(7):897-9. PubMed ID: 16455752
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  • 27. SimHap GUI: an intuitive graphical user interface for genetic association analysis.
    Carter KW, McCaskie PA, Palmer LJ.
    BMC Bioinformatics; 2008 Dec 25; 9():557. PubMed ID: 19109877
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  • 28. FlexAID: Revisiting Docking on Non-Native-Complex Structures.
    Gaudreault F, Najmanovich RJ.
    J Chem Inf Model; 2015 Jul 27; 55(7):1323-36. PubMed ID: 26076070
    [Abstract] [Full Text] [Related]

  • 29. Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal.
    Terwilliger TC, Bunkóczi G, Hung LW, Zwart PH, Smith JL, Akey DL, Adams PD.
    Acta Crystallogr D Struct Biol; 2016 Mar 27; 72(Pt 3):359-74. PubMed ID: 26960123
    [Abstract] [Full Text] [Related]

  • 30. APRV - a program for automated data processing, refinement and visualization.
    Kroemer M, Dreyer MK, Wendt KU.
    Acta Crystallogr D Biol Crystallogr; 2004 Sep 27; 60(Pt 9):1679-82. PubMed ID: 15333953
    [Abstract] [Full Text] [Related]

  • 31. User-centric design of a 3D search interface for protein-ligand complexes.
    Diedrich K, Ehrt C, Graef J, Poppinga M, Ritter N, Rarey M.
    J Comput Aided Mol Des; 2024 May 30; 38(1):23. PubMed ID: 38814371
    [Abstract] [Full Text] [Related]

  • 32. Modelling covalent linkages in CCP4.
    Nicholls RA, Joosten RP, Long F, Wojdyr M, Lebedev A, Krissinel E, Catapano L, Fischer M, Emsley P, Murshudov GN.
    Acta Crystallogr D Struct Biol; 2021 Jun 01; 77(Pt 6):712-726. PubMed ID: 34076587
    [Abstract] [Full Text] [Related]

  • 33. CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR.
    Mureddu LG, Ragan TJ, Brooksbank EJ, Vuister GW.
    J Biomol NMR; 2020 Nov 01; 74(10-11):565-577. PubMed ID: 32638146
    [Abstract] [Full Text] [Related]

  • 34. CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.
    Kozlikova B, Sebestova E, Sustr V, Brezovsky J, Strnad O, Daniel L, Bednar D, Pavelka A, Manak M, Bezdeka M, Benes P, Kotry M, Gora A, Damborsky J, Sochor J.
    Bioinformatics; 2014 Sep 15; 30(18):2684-5. PubMed ID: 24876375
    [Abstract] [Full Text] [Related]

  • 35. WONKA: objective novel complex analysis for ensembles of protein-ligand structures.
    Bradley AR, Wall ID, von Delft F, Green DV, Deane CM, Marsden BD.
    J Comput Aided Mol Des; 2015 Oct 15; 29(10):963-73. PubMed ID: 26387008
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  • 36. Detailed comparison of the protein-ligand docking efficiencies of GOLD, a commercial package and ArgusLab, a licensable freeware.
    Joy S, Nair PS, Hariharan R, Pillai MR.
    In Silico Biol; 2006 Oct 15; 6(6):601-5. PubMed ID: 17518767
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  • 37. Towards automated crystallographic structure refinement with phenix.refine.
    Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD.
    Acta Crystallogr D Biol Crystallogr; 2012 Apr 15; 68(Pt 4):352-67. PubMed ID: 22505256
    [Abstract] [Full Text] [Related]

  • 38. Binding MOAD, a high-quality protein-ligand database.
    Benson ML, Smith RD, Khazanov NA, Dimcheff B, Beaver J, Dresslar P, Nerothin J, Carlson HA.
    Nucleic Acids Res; 2008 Jan 15; 36(Database issue):D674-8. PubMed ID: 18055497
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  • 39. KMWin--a convenient tool for graphical presentation of results from Kaplan-Meier survival time analysis.
    Gross A, Ziepert M, Scholz M.
    PLoS One; 2012 Jan 15; 7(6):e38960. PubMed ID: 22723912
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  • 40. Using AutoDock for ligand-receptor docking.
    Morris GM, Huey R, Olson AJ.
    Curr Protoc Bioinformatics; 2008 Dec 15; Chapter 8():Unit 8.14. PubMed ID: 19085980
    [Abstract] [Full Text] [Related]

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