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Journal Abstract Search

218 related items for PubMed ID: 28436885

  • 1. Investigating Correlation between Protein Sequence Similarity and Semantic Similarity Using Gene Ontology Annotations.
    Ikram N, Qadir MA, Afzal MT.
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):905-912. PubMed ID: 28436885
    [Abstract] [Full Text] [Related]

  • 2. A relation based measure of semantic similarity for Gene Ontology annotations.
    Sheehan B, Quigley A, Gaudin B, Dobson S.
    BMC Bioinformatics; 2008 Nov 04; 9():468. PubMed ID: 18983678
    [Abstract] [Full Text] [Related]

  • 3. GO functional similarity clustering depends on similarity measure, clustering method, and annotation completeness.
    Liu M, Thomas PD.
    BMC Bioinformatics; 2019 Mar 27; 20(1):155. PubMed ID: 30917779
    [Abstract] [Full Text] [Related]

  • 4. Semantic Similarity in the Gene Ontology.
    Pesquita C.
    Methods Mol Biol; 2017 Mar 27; 1446():161-173. PubMed ID: 27812942
    [Abstract] [Full Text] [Related]

  • 5. Evaluating the significance of protein functional similarity based on gene ontology.
    Konopka BM, Golda T, Kotulska M.
    J Comput Biol; 2014 Nov 27; 21(11):809-22. PubMed ID: 25188814
    [Abstract] [Full Text] [Related]

  • 6. Assessment of Semantic Similarity between Proteins Using Information Content and Topological Properties of the Gene Ontology Graph.
    Dutta P, Basu S, Kundu M.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Nov 27; 15(3):839-849. PubMed ID: 28371781
    [Abstract] [Full Text] [Related]

  • 7. Measure the Semantic Similarity of GO Terms Using Aggregate Information Content.
    Song X, Li L, Srimani PK, Yu PS, Wang JZ.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Nov 27; 11(3):468-76. PubMed ID: 26356015
    [Abstract] [Full Text] [Related]

  • 8. Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach.
    Peng J, Zhang X, Hui W, Lu J, Li Q, Liu S, Shang X.
    BMC Syst Biol; 2018 Mar 19; 12(Suppl 2):18. PubMed ID: 29560823
    [Abstract] [Full Text] [Related]

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  • 11. Interspecies gene function prediction using semantic similarity.
    Yu G, Luo W, Fu G, Wang J.
    BMC Syst Biol; 2016 Dec 23; 10(Suppl 4):121. PubMed ID: 28155711
    [Abstract] [Full Text] [Related]

  • 12. A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool.
    Mazandu GK, Chimusa ER, Mbiyavanga M, Mulder NJ.
    Bioinformatics; 2016 Feb 01; 32(3):477-9. PubMed ID: 26476781
    [Abstract] [Full Text] [Related]

  • 13. Improving automatic GO annotation with semantic similarity.
    Sarker B, Khare N, Devignes MD, Aridhi S.
    BMC Bioinformatics; 2022 Dec 12; 23(Suppl 2):433. PubMed ID: 36510133
    [Abstract] [Full Text] [Related]

  • 14. TopoICSim: a new semantic similarity measure based on gene ontology.
    Ehsani R, Drabløs F.
    BMC Bioinformatics; 2016 Jul 29; 17(1):296. PubMed ID: 27473391
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  • 16. Correlation between gene expression and GO semantic similarity.
    Sevilla JL, Segura V, Podhorski A, Guruceaga E, Mato JM, Martínez-Cruz LA, Corrales FJ, Rubio A.
    IEEE/ACM Trans Comput Biol Bioinform; 2005 Jul 29; 2(4):330-8. PubMed ID: 17044170
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  • 17. A graph-based semantic similarity measure for the gene ontology.
    Alvarez MA, Yan C.
    J Bioinform Comput Biol; 2011 Dec 29; 9(6):681-95. PubMed ID: 22084008
    [Abstract] [Full Text] [Related]

  • 18. Multi-Factored Gene-Gene Proximity Measures Exploiting Biological Knowledge Extracted from Gene Ontology: Application in Gene Clustering.
    Acharya S, Saha S, Pradhan P.
    IEEE/ACM Trans Comput Biol Bioinform; 2020 Dec 29; 17(1):207-219. PubMed ID: 29994130
    [Abstract] [Full Text] [Related]

  • 19. Bi-directional semantic similarity for gene ontology to optimize biological and clinical analyses.
    Bien SJ, Park CH, Shim HJ, Yang W, Kim J, Kim JH.
    J Am Med Inform Assoc; 2012 Dec 29; 19(5):765-74. PubMed ID: 22374934
    [Abstract] [Full Text] [Related]

  • 20. Metrics for GO based protein semantic similarity: a systematic evaluation.
    Pesquita C, Faria D, Bastos H, Ferreira AE, Falcão AO, Couto FM.
    BMC Bioinformatics; 2008 Apr 29; 9 Suppl 5(Suppl 5):S4. PubMed ID: 18460186
    [Abstract] [Full Text] [Related]

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