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Journal Abstract Search

156 related items for PubMed ID: 28521770

  • 21. Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs.
    Younsi R, MacLean D.
    Bioinformatics; 2015 Mar 01; 31(5):642-6. PubMed ID: 25344498
    [Abstract] [Full Text] [Related]

  • 22. Pan-genome de Bruijn graph using the bidirectional FM-index.
    Depuydt L, Renders L, Abeel T, Fostier J.
    BMC Bioinformatics; 2023 Oct 26; 24(1):400. PubMed ID: 37884897
    [Abstract] [Full Text] [Related]

  • 23. Integrating long-range connectivity information into de Bruijn graphs.
    Turner I, Garimella KV, Iqbal Z, McVean G.
    Bioinformatics; 2018 Aug 01; 34(15):2556-2565. PubMed ID: 29554215
    [Abstract] [Full Text] [Related]

  • 24. PanTools: representation, storage and exploration of pan-genomic data.
    Sheikhizadeh S, Schranz ME, Akdel M, de Ridder D, Smit S.
    Bioinformatics; 2016 Sep 01; 32(17):i487-i493. PubMed ID: 27587666
    [Abstract] [Full Text] [Related]

  • 25. Graph-based pan-genomes: increased opportunities in plant genomics.
    Wang S, Qian YQ, Zhao RP, Chen LL, Song JM.
    J Exp Bot; 2023 Jan 01; 74(1):24-39. PubMed ID: 36255144
    [Abstract] [Full Text] [Related]

  • 26. DNA sequences alignment method using sparse index on pan-genome graph.
    Gao J, Xu Y.
    J Bioinform Comput Biol; 2024 Aug 01; 22(4):2450019. PubMed ID: 39215522
    [Abstract] [Full Text] [Related]

  • 27. Fully-sensitive seed finding in sequence graphs using a hybrid index.
    Ghaffaari A, Marschall T.
    Bioinformatics; 2019 Jul 15; 35(14):i81-i89. PubMed ID: 31510650
    [Abstract] [Full Text] [Related]

  • 28. Distance indexing and seed clustering in sequence graphs.
    Chang X, Eizenga J, Novak AM, Sirén J, Paten B.
    Bioinformatics; 2020 Jul 01; 36(Suppl_1):i146-i153. PubMed ID: 32657356
    [Abstract] [Full Text] [Related]

  • 29. Cactus graphs for genome comparisons.
    Paten B, Diekhans M, Earl D, John JS, Ma J, Suh B, Haussler D.
    J Comput Biol; 2011 Mar 01; 18(3):469-81. PubMed ID: 21385048
    [Abstract] [Full Text] [Related]

  • 30. The design and construction of reference pangenome graphs with minigraph.
    Li H, Feng X, Chu C.
    Genome Biol; 2020 Oct 16; 21(1):265. PubMed ID: 33066802
    [Abstract] [Full Text] [Related]

  • 31. A universal genomic coordinate translator for comparative genomics.
    Zamani N, Sundström G, Meadows JR, Höppner MP, Dainat J, Lantz H, Haas BJ, Grabherr MG.
    BMC Bioinformatics; 2014 Jun 30; 15():227. PubMed ID: 24976580
    [Abstract] [Full Text] [Related]

  • 32. Bandage: interactive visualization of de novo genome assemblies.
    Wick RR, Schultz MB, Zobel J, Holt KE.
    Bioinformatics; 2015 Oct 15; 31(20):3350-2. PubMed ID: 26099265
    [Abstract] [Full Text] [Related]

  • 33. Genome alignment with graph data structures: a comparison.
    Kehr B, Trappe K, Holtgrewe M, Reinert K.
    BMC Bioinformatics; 2014 Apr 09; 15():99. PubMed ID: 24712884
    [Abstract] [Full Text] [Related]

  • 34. Pan-Tetris: an interactive visualisation for Pan-genomes.
    Hennig A, Bernhardt J, Nieselt K.
    BMC Bioinformatics; 2015 Apr 09; 16 Suppl 11(Suppl 11):S3. PubMed ID: 26328606
    [Abstract] [Full Text] [Related]

  • 35. Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs.
    Colquhoun RM, Hall MB, Lima L, Roberts LW, Malone KM, Hunt M, Letcher B, Hawkey J, George S, Pankhurst L, Iqbal Z.
    Genome Biol; 2021 Sep 14; 22(1):267. PubMed ID: 34521456
    [Abstract] [Full Text] [Related]

  • 36. GLANET: genomic loci annotation and enrichment tool.
    Otlu B, Firtina C, Keles S, Tastan O.
    Bioinformatics; 2017 Sep 15; 33(18):2818-2828. PubMed ID: 28541490
    [Abstract] [Full Text] [Related]

  • 37. A Sequence Distance Graph framework for genome assembly and analysis.
    Yanes L, Garcia Accinelli G, Wright J, Ward BJ, Clavijo BJ.
    F1000Res; 2019 Sep 15; 8():1490. PubMed ID: 31723420
    [Abstract] [Full Text] [Related]

  • 38. Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.
    Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, Fulton RS, Kremitzki M, Magrini V, Markovic C, McGrath S, Steinberg KM, Auger K, Chow W, Collins J, Harden G, Hubbard T, Pelan S, Simpson JT, Threadgold G, Torrance J, Wood JM, Clarke L, Koren S, Boitano M, Peluso P, Li H, Chin CS, Phillippy AM, Durbin R, Wilson RK, Flicek P, Eichler EE, Church DM.
    Genome Res; 2017 May 15; 27(5):849-864. PubMed ID: 28396521
    [Abstract] [Full Text] [Related]

  • 39. GenPlay Multi-Genome, a tool to compare and analyze multiple human genomes in a graphical interface.
    Lajugie J, Fourel N, Bouhassira EE.
    Bioinformatics; 2015 Jan 01; 31(1):109-11. PubMed ID: 25178461
    [Abstract] [Full Text] [Related]

  • 40.
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