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Journal Abstract Search

145 related items for PubMed ID: 28633280

  • 1.
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  • 2. Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells.
    Wong KC, Li Y, Peng C.
    Bioinformatics; 2016 Feb 01; 32(3):321-4. PubMed ID: 26411866
    [Abstract] [Full Text] [Related]

  • 3. Heterodimeric DNA motif synthesis and validations.
    Wong KC, Lin J, Li X, Lin Q, Liang C, Song YQ.
    Nucleic Acids Res; 2019 Feb 28; 47(4):1628-1636. PubMed ID: 30590725
    [Abstract] [Full Text] [Related]

  • 4.
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  • 5. BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.
    Kähärä J, Lähdesmäki H.
    Bioinformatics; 2015 Sep 01; 31(17):2852-9. PubMed ID: 25957350
    [Abstract] [Full Text] [Related]

  • 6. MotifHub: Detection of trans-acting DNA motif group with probabilistic modeling algorithm.
    Liu Z, Wong HM, Chen X, Lin J, Zhang S, Yan S, Wang F, Li X, Wong KC.
    Comput Biol Med; 2024 Jan 01; 168():107753. PubMed ID: 38039889
    [Abstract] [Full Text] [Related]

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  • 8. Finding de novo methylated DNA motifs.
    Ngo V, Wang M, Wang W.
    Bioinformatics; 2019 Sep 15; 35(18):3287-3293. PubMed ID: 30726880
    [Abstract] [Full Text] [Related]

  • 9. STREME: accurate and versatile sequence motif discovery.
    Bailey TL.
    Bioinformatics; 2021 Sep 29; 37(18):2834-2840. PubMed ID: 33760053
    [Abstract] [Full Text] [Related]

  • 10. Exploiting sequence-based features for predicting enhancer-promoter interactions.
    Yang Y, Zhang R, Singh S, Ma J.
    Bioinformatics; 2017 Jul 15; 33(14):i252-i260. PubMed ID: 28881991
    [Abstract] [Full Text] [Related]

  • 11. BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.
    De Witte D, Van de Velde J, Decap D, Van Bel M, Audenaert P, Demeester P, Dhoedt B, Vandepoele K, Fostier J.
    Bioinformatics; 2015 Dec 01; 31(23):3758-66. PubMed ID: 26254488
    [Abstract] [Full Text] [Related]

  • 12.
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  • 13. A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs.
    Seitzer P, Wilbanks EG, Larsen DJ, Facciotti MT.
    BMC Bioinformatics; 2012 Nov 27; 13():317. PubMed ID: 23181585
    [Abstract] [Full Text] [Related]

  • 14. DISCOVER: a feature-based discriminative method for motif search in complex genomes.
    Fu W, Ray P, Xing EP.
    Bioinformatics; 2009 Jun 15; 25(12):i321-9. PubMed ID: 19478006
    [Abstract] [Full Text] [Related]

  • 15.
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  • 16. A fast weak motif-finding algorithm based on community detection in graphs.
    Jia C, Carson MB, Yu J.
    BMC Bioinformatics; 2013 Jul 17; 14():227. PubMed ID: 23865838
    [Abstract] [Full Text] [Related]

  • 17. Poly(A) motif prediction using spectral latent features from human DNA sequences.
    Xie B, Jankovic BR, Bajic VB, Song L, Gao X.
    Bioinformatics; 2013 Jul 01; 29(13):i316-25. PubMed ID: 23813000
    [Abstract] [Full Text] [Related]

  • 18. Identification of DNA motif pairs on paired sequences based on composite heterogeneous graph.
    Wu Q, Li Y, Wang Q, Zhao X, Sun D, Liu B.
    Front Genet; 2024 Jul 01; 15():1424085. PubMed ID: 38952710
    [Abstract] [Full Text] [Related]

  • 19. Predicting CTCF-mediated chromatin loops using CTCF-MP.
    Zhang R, Wang Y, Yang Y, Zhang Y, Ma J.
    Bioinformatics; 2018 Jul 01; 34(13):i133-i141. PubMed ID: 29949986
    [Abstract] [Full Text] [Related]

  • 20. BEESEM: estimation of binding energy models using HT-SELEX data.
    Ruan S, Swamidass SJ, Stormo GD.
    Bioinformatics; 2017 Aug 01; 33(15):2288-2295. PubMed ID: 28379348
    [Abstract] [Full Text] [Related]

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