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Journal Abstract Search

120 related items for PubMed ID: 28706471

  • 1. Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology.
    Ross KE, Natale DA, Arighi C, Chen SC, Huang H, Li G, Ren J, Wang M, Vijay-Shanker K, Wu CH.
    CEUR Workshop Proc; 2016 Aug; 1747():. PubMed ID: 28706471
    [Abstract] [Full Text] [Related]

  • 2. iPTMnet: an integrated resource for protein post-translational modification network discovery.
    Huang H, Arighi CN, Ross KE, Ren J, Li G, Chen SC, Wang Q, Cowart J, Vijay-Shanker K, Wu CH.
    Nucleic Acids Res; 2018 Jan 04; 46(D1):D542-D550. PubMed ID: 29145615
    [Abstract] [Full Text] [Related]

  • 3. The eFIP system for text mining of protein interaction networks of phosphorylated proteins.
    Tudor CO, Arighi CN, Wang Q, Wu CH, Vijay-Shanker K.
    Database (Oxford); 2012 Jan 04; 2012():bas044. PubMed ID: 23221174
    [Abstract] [Full Text] [Related]

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  • 5. Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.
    Ross KE, Arighi CN, Ren J, Huang H, Wu CH.
    Database (Oxford); 2013 Jan 04; 2013():bat038. PubMed ID: 23749465
    [Abstract] [Full Text] [Related]

  • 6. Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.
    Tudor CO, Ross KE, Li G, Vijay-Shanker K, Wu CH, Arighi CN.
    Database (Oxford); 2015 Jan 04; 2015():. PubMed ID: 25833953
    [Abstract] [Full Text] [Related]

  • 7. iPTMnet: Integrative Bioinformatics for Studying PTM Networks.
    Ross KE, Huang H, Ren J, Arighi CN, Li G, Tudor CO, Lv M, Lee JY, Chen SC, Vijay-Shanker K, Wu CH.
    Methods Mol Biol; 2017 Jan 04; 1558():333-353. PubMed ID: 28150246
    [Abstract] [Full Text] [Related]

  • 8. RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
    Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH.
    Database (Oxford); 2014 Jan 04; 2014():. PubMed ID: 25122463
    [Abstract] [Full Text] [Related]

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  • 10. Role of phosphorylation in determining the backbone dynamics of the serine/threonine-proline motif and Pin1 substrate recognition.
    Schutkowski M, Bernhardt A, Zhou XZ, Shen M, Reimer U, Rahfeld JU, Lu KP, Fischer G.
    Biochemistry; 1998 Apr 21; 37(16):5566-75. PubMed ID: 9548941
    [Abstract] [Full Text] [Related]

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  • 12. Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
    Natale DA, Arighi CN, Blake JA, Bona J, Chen C, Chen SC, Christie KR, Cowart J, D'Eustachio P, Diehl AD, Drabkin HJ, Duncan WD, Huang H, Ren J, Ross K, Ruttenberg A, Shamovsky V, Smith B, Wang Q, Zhang J, El-Sayed A, Wu CH.
    Nucleic Acids Res; 2017 Jan 04; 45(D1):D339-D346. PubMed ID: 27899649
    [Abstract] [Full Text] [Related]

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  • 14. Characterization of Proteoforms with Unknown Post-translational Modifications Using the MIScore.
    Kou Q, Zhu B, Wu S, Ansong C, Tolić N, Paša-Tolić L, Liu X.
    J Proteome Res; 2016 Aug 05; 15(8):2422-32. PubMed ID: 27291504
    [Abstract] [Full Text] [Related]

  • 15. RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.
    Gavali S, Cowart J, Chen C, Ross KE, Arighi C, Wu CH.
    Database (Oxford); 2020 Jan 01; 2020():. PubMed ID: 32395768
    [Abstract] [Full Text] [Related]

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  • 17. iPTMnet RESTful API for Post-translational Modification Network Analysis.
    Gavali S, Ross KE, Cowart J, Chen C, Wu CH.
    Methods Mol Biol; 2022 Jan 01; 2499():187-204. PubMed ID: 35696082
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  • 19. Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements.
    Shortreed MR, Frey BL, Scalf M, Knoener RA, Cesnik AJ, Smith LM.
    J Proteome Res; 2016 Apr 01; 15(4):1213-21. PubMed ID: 26941048
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