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82 related items for PubMed ID: 28841400

  • 1. Reference transcriptome assembly and annotation for perennial ryegrass.
    Shinozuka H, Cogan NOI, Spangenberg GC, Forster JW.
    Genome; 2017 Dec; 60(12):1086-1088. PubMed ID: 28841400
    [Abstract] [Full Text] [Related]

  • 2. An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly.
    Velmurugan J, Mollison E, Barth S, Marshall D, Milne L, Creevey CJ, Lynch B, Meally H, McCabe M, Milbourne D.
    Ann Bot; 2016 Jul; 118(1):71-87. PubMed ID: 27268483
    [Abstract] [Full Text] [Related]

  • 3. A transcriptome map of perennial ryegrass (Lolium perenne L.).
    Studer B, Byrne S, Nielsen RO, Panitz F, Bendixen C, Islam MS, Pfeifer M, Lübberstedt T, Asp T.
    BMC Genomics; 2012 Apr 18; 13():140. PubMed ID: 22513206
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  • 6. The genome and transcriptome of perennial ryegrass mitochondria.
    Islam MS, Studer B, Byrne SL, Farrell JD, Panitz F, Bendixen C, Møller IM, Asp T.
    BMC Genomics; 2013 Mar 23; 14():202. PubMed ID: 23521852
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  • 7. A synteny-based draft genome sequence of the forage grass Lolium perenne.
    Byrne SL, Nagy I, Pfeifer M, Armstead I, Swain S, Studer B, Mayer K, Campbell JD, Czaban A, Hentrup S, Panitz F, Bendixen C, Hedegaard J, Caccamo M, Asp T.
    Plant J; 2015 Nov 23; 84(4):816-26. PubMed ID: 26408275
    [Abstract] [Full Text] [Related]

  • 8. De novo assembly of the perennial ryegrass transcriptome using an RNA-Seq strategy.
    Farrell JD, Byrne S, Paina C, Asp T.
    PLoS One; 2014 Nov 23; 9(8):e103567. PubMed ID: 25126744
    [Abstract] [Full Text] [Related]

  • 9. Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout.
    Salem M, Paneru B, Al-Tobasei R, Abdouni F, Thorgaard GH, Rexroad CE, Yao J.
    PLoS One; 2015 Nov 23; 10(3):e0121778. PubMed ID: 25793877
    [Abstract] [Full Text] [Related]

  • 10. Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne.
    Ruttink T, Sterck L, Rohde A, Bendixen C, Rouzé P, Asp T, Van de Peer Y, Roldan-Ruiz I.
    Plant Biotechnol J; 2013 Jun 23; 11(5):605-17. PubMed ID: 23433242
    [Abstract] [Full Text] [Related]

  • 11. Chromosome-scale assembly and annotation of the perennial ryegrass genome.
    Nagy I, Veeckman E, Liu C, Bel MV, Vandepoele K, Jensen CS, Ruttink T, Asp T.
    BMC Genomics; 2022 Jul 12; 23(1):505. PubMed ID: 35831814
    [Abstract] [Full Text] [Related]

  • 12. Challenges and advances for transcriptome assembly in non-model species.
    Ungaro A, Pech N, Martin JF, McCairns RJS, Mévy JP, Chappaz R, Gilles A.
    PLoS One; 2017 Jul 12; 12(9):e0185020. PubMed ID: 28931057
    [Abstract] [Full Text] [Related]

  • 13. Transcriptome analysis reveals season-specific rbcS gene expression profiles in diploid perennial ryegrass (Lolium perenne L.).
    Sathish P, Withana N, Biswas M, Bryant C, Templeton K, Al-Wahb M, Smith-Espinoza C, Roche JR, Elborough KM, Phillips JR.
    Plant Biotechnol J; 2007 Jan 12; 5(1):146-61. PubMed ID: 17207264
    [Abstract] [Full Text] [Related]

  • 14. Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly.
    Frei D, Veekman E, Grogg D, Stoffel-Studer I, Morishima A, Shimizu-Inatsugi R, Yates S, Shimizu KK, Frey JE, Studer B, Copetti D.
    Genome Biol Evol; 2021 Aug 03; 13(8):. PubMed ID: 34247248
    [Abstract] [Full Text] [Related]

  • 15. Orthology Guided Transcriptome Assembly of Italian Ryegrass and Meadow Fescue for Single-Nucleotide Polymorphism Discovery.
    Stočes Š, Ruttink T, Bartoš J, Studer B, Yates S, Zwierzykowski Z, Abrouk M, Roldán-Ruiz I, Książczyk T, Rey E, Doležel J, Kopecký D.
    Plant Genome; 2016 Nov 03; 9(3):. PubMed ID: 27902806
    [Abstract] [Full Text] [Related]

  • 16. The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads.
    Wang Z, Hobson N, Galindo L, Zhu S, Shi D, McDill J, Yang L, Hawkins S, Neutelings G, Datla R, Lambert G, Galbraith DW, Grassa CJ, Geraldes A, Cronk QC, Cullis C, Dash PK, Kumar PA, Cloutier S, Sharpe AG, Wong GK, Wang J, Deyholos MK.
    Plant J; 2012 Nov 03; 72(3):461-73. PubMed ID: 22757964
    [Abstract] [Full Text] [Related]

  • 17. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV, Furtado A, Mason PJ, Marquardt A, Kasirajan L, Thirugnanasambandam PP, Botha FC, Henry RJ.
    BMC Genomics; 2017 May 22; 18(1):395. PubMed ID: 28532419
    [Abstract] [Full Text] [Related]

  • 18. Exploitation of data from breeding programs supports rapid implementation of genomic selection for key agronomic traits in perennial ryegrass.
    Pembleton LW, Inch C, Baillie RC, Drayton MC, Thakur P, Ogaji YO, Spangenberg GC, Forster JW, Daetwyler HD, Cogan NOI.
    Theor Appl Genet; 2018 Sep 22; 131(9):1891-1902. PubMed ID: 29860624
    [Abstract] [Full Text] [Related]

  • 19. Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.
    Bräutigam A, Mullick T, Schliesky S, Weber AP.
    J Exp Bot; 2011 May 22; 62(9):3093-102. PubMed ID: 21398430
    [Abstract] [Full Text] [Related]

  • 20. A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).
    Kuderna LFK, Tomlinson C, Hillier LW, Tran A, Fiddes IT, Armstrong J, Laayouni H, Gordon D, Huddleston J, Garcia Perez R, Povolotskaya I, Serres Armero A, Gómez Garrido J, Ho D, Ribeca P, Alioto T, Green RE, Paten B, Navarro A, Betranpetit J, Herrero J, Eichler EE, Sharp AJ, Feuk L, Warren WC, Marques-Bonet T.
    Gigascience; 2017 Nov 01; 6(11):1-6. PubMed ID: 29092041
    [Abstract] [Full Text] [Related]

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