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Journal Abstract Search

116 related items for PubMed ID: 28901593

  • 1. Interactive comparison and remediation of collections of macromolecular structures.
    Moriarty NW, Liebschner D, Klei HE, Echols N, Afonine PV, Headd JJ, Poon BK, Adams PD.
    Protein Sci; 2018 Jan; 27(1):182-194. PubMed ID: 28901593
    [Abstract] [Full Text] [Related]

  • 2. The XChemExplorer graphical workflow tool for routine or large-scale protein-ligand structure determination.
    Krojer T, Talon R, Pearce N, Collins P, Douangamath A, Brandao-Neto J, Dias A, Marsden B, von Delft F.
    Acta Crystallogr D Struct Biol; 2017 Mar 01; 73(Pt 3):267-278. PubMed ID: 28291762
    [Abstract] [Full Text] [Related]

  • 3. Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement.
    Headd JJ, Echols N, Afonine PV, Moriarty NW, Gildea RJ, Adams PD.
    Acta Crystallogr D Biol Crystallogr; 2014 May 01; 70(Pt 5):1346-56. PubMed ID: 24816103
    [Abstract] [Full Text] [Related]

  • 4. Predicting protein model correctness in Coot using machine learning.
    Bond PS, Wilson KS, Cowtan KD.
    Acta Crystallogr D Struct Biol; 2020 Aug 01; 76(Pt 8):713-723. PubMed ID: 32744253
    [Abstract] [Full Text] [Related]

  • 5. Simulated-annealing real-space refinement as a tool in model building.
    Korostelev A, Bertram R, Chapman MS.
    Acta Crystallogr D Biol Crystallogr; 2002 May 01; 58(Pt 5):761-7. PubMed ID: 11976486
    [Abstract] [Full Text] [Related]

  • 6. PyWATER: a PyMOL plug-in to find conserved water molecules in proteins by clustering.
    Patel H, Grüning BA, Günther S, Merfort I.
    Bioinformatics; 2014 Oct 15; 30(20):2978-80. PubMed ID: 24990608
    [Abstract] [Full Text] [Related]

  • 7. Tools for integrated sequence-structure analysis with UCSF Chimera.
    Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE.
    BMC Bioinformatics; 2006 Jul 12; 7():339. PubMed ID: 16836757
    [Abstract] [Full Text] [Related]

  • 8. The crystallographic symmetry test for the correctness of a set of phases.
    Tzamalis P, Bethanis K, Hountas A, Tsoucaris G.
    Acta Crystallogr A; 2003 Jan 12; 59(Pt 1):28-33. PubMed ID: 12496459
    [Abstract] [Full Text] [Related]

  • 9. Molstack-Interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps.
    Porebski PJ, Sroka P, Zheng H, Cooper DR, Minor W.
    Protein Sci; 2018 Jan 12; 27(1):86-94. PubMed ID: 28815771
    [Abstract] [Full Text] [Related]

  • 10. MatchMaps: non-isomorphous difference maps for X-ray crystallography.
    Brookner DE, Hekstra DR.
    J Appl Crystallogr; 2024 Jun 01; 57(Pt 3):885-895. PubMed ID: 38846758
    [Abstract] [Full Text] [Related]

  • 11. xPyder: a PyMOL plugin to analyze coupled residues and their networks in protein structures.
    Pasi M, Tiberti M, Arrigoni A, Papaleo E.
    J Chem Inf Model; 2012 Jul 23; 52(7):1865-74. PubMed ID: 22721491
    [Abstract] [Full Text] [Related]

  • 12. Features and development of Coot.
    Emsley P, Lohkamp B, Scott WG, Cowtan K.
    Acta Crystallogr D Biol Crystallogr; 2010 Apr 23; 66(Pt 4):486-501. PubMed ID: 20383002
    [Abstract] [Full Text] [Related]

  • 13. You are lost without a map: Navigating the sea of protein structures.
    Lamb AL, Kappock TJ, Silvaggi NR.
    Biochim Biophys Acta; 2015 Apr 23; 1854(4):258-68. PubMed ID: 25554228
    [Abstract] [Full Text] [Related]

  • 14. MOSBY: a molecular structure viewer program with portability and extensibility.
    Ueno Y, Asai K.
    J Mol Graph Model; 2002 Mar 23; 20(5):411-3. PubMed ID: 11885962
    [Abstract] [Full Text] [Related]

  • 15. On interpretation of protein X-ray structures: Planarity of the peptide unit.
    Chellapa GD, Rose GD.
    Proteins; 2015 Sep 23; 83(9):1687-92. PubMed ID: 26148341
    [Abstract] [Full Text] [Related]

  • 16. IBiSS, a versatile and interactive tool for integrated sequence and 3D structure analysis of large macromolecular complexes.
    Beinsteiner B, Michalon J, Klaholz BP.
    Bioinformatics; 2015 Oct 15; 31(20):3339-44. PubMed ID: 26092861
    [Abstract] [Full Text] [Related]

  • 17. STARS: statistics on inter-atomic distances and torsion angles in protein secondary structures.
    Zheng Y, Yang D.
    Bioinformatics; 2005 Jun 15; 21(12):2925-6. PubMed ID: 15827078
    [Abstract] [Full Text] [Related]

  • 18. Data Mining of Macromolecular Structures.
    van Beusekom B, Perrakis A, Joosten RP.
    Methods Mol Biol; 2016 Jun 15; 1415():107-38. PubMed ID: 27115630
    [Abstract] [Full Text] [Related]

  • 19. PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.
    Pietal MJ, Tuszynska I, Bujnicki JM.
    Bioinformatics; 2007 Jun 01; 23(11):1429-30. PubMed ID: 17400727
    [Abstract] [Full Text] [Related]

  • 20. mulPBA: an efficient multiple protein structure alignment method based on a structural alphabet.
    Léonard S, Joseph AP, Srinivasan N, Gelly JC, de Brevern AG.
    J Biomol Struct Dyn; 2014 Apr 01; 32(4):661-8. PubMed ID: 23659291
    [Abstract] [Full Text] [Related]

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