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356 related items for PubMed ID: 29032205

  • 1. Binding and Hydrolysis of a Single ATP Is Sufficient for N-Gate Closure and DNA Supercoiling by Gyrase.
    Hartmann S, Gubaev A, Klostermeier D.
    J Mol Biol; 2017 Nov 24; 429(23):3717-3729. PubMed ID: 29032205
    [Abstract] [Full Text] [Related]

  • 2. The mechanism of negative DNA supercoiling: a cascade of DNA-induced conformational changes prepares gyrase for strand passage.
    Gubaev A, Klostermeier D.
    DNA Repair (Amst); 2014 Apr 24; 16():23-34. PubMed ID: 24674625
    [Abstract] [Full Text] [Related]

  • 3. The acidic C-terminal tail of the GyrA subunit moderates the DNA supercoiling activity of Bacillus subtilis gyrase.
    Lanz MA, Farhat M, Klostermeier D.
    J Biol Chem; 2014 May 02; 289(18):12275-85. PubMed ID: 24563461
    [Abstract] [Full Text] [Related]

  • 4. DNA-induced narrowing of the gyrase N-gate coordinates T-segment capture and strand passage.
    Gubaev A, Klostermeier D.
    Proc Natl Acad Sci U S A; 2011 Aug 23; 108(34):14085-90. PubMed ID: 21817063
    [Abstract] [Full Text] [Related]

  • 5. The DNA-gate of Bacillus subtilis gyrase is predominantly in the closed conformation during the DNA supercoiling reaction.
    Gubaev A, Hilbert M, Klostermeier D.
    Proc Natl Acad Sci U S A; 2009 Aug 11; 106(32):13278-83. PubMed ID: 19666507
    [Abstract] [Full Text] [Related]

  • 6. DNA gyrase with a single catalytic tyrosine can catalyze DNA supercoiling by a nicking-closing mechanism.
    Gubaev A, Weidlich D, Klostermeier D.
    Nucleic Acids Res; 2016 Dec 01; 44(21):10354-10366. PubMed ID: 27557712
    [Abstract] [Full Text] [Related]

  • 7. Gyrase containing a single C-terminal domain catalyzes negative supercoiling of DNA by decreasing the linking number in steps of two.
    Stelljes JT, Weidlich D, Gubaev A, Klostermeier D.
    Nucleic Acids Res; 2018 Jul 27; 46(13):6773-6784. PubMed ID: 29893908
    [Abstract] [Full Text] [Related]

  • 8. Potassium ions are required for nucleotide-induced closure of gyrase N-gate.
    Gubaev A, Klostermeier D.
    J Biol Chem; 2012 Mar 30; 287(14):10916-21. PubMed ID: 22343632
    [Abstract] [Full Text] [Related]

  • 9. Adenosine 5'-O-(3-thio)triphosphate (ATPgammaS) promotes positive supercoiling of DNA by T. maritima reverse gyrase.
    Jungblut SP, Klostermeier D.
    J Mol Biol; 2007 Aug 03; 371(1):197-209. PubMed ID: 17560602
    [Abstract] [Full Text] [Related]

  • 10. Dissection of the nucleotide cycle of B. subtilis DNA gyrase and its modulation by DNA.
    Göttler T, Klostermeier D.
    J Mol Biol; 2007 Apr 13; 367(5):1392-404. PubMed ID: 17320901
    [Abstract] [Full Text] [Related]

  • 11. The GyrA-box determines the geometry of DNA bound to gyrase and couples DNA binding to the nucleotide cycle.
    Lanz MA, Klostermeier D.
    Nucleic Acids Res; 2012 Nov 13; 40(21):10893-903. PubMed ID: 22977179
    [Abstract] [Full Text] [Related]

  • 12. Mapping the spectrum of conformational states of the DNA- and C-gates in Bacillus subtilis gyrase.
    Rudolph MG, Klostermeier D.
    J Mol Biol; 2013 Aug 09; 425(15):2632-40. PubMed ID: 23602808
    [Abstract] [Full Text] [Related]

  • 13. The "GyrA-box" is required for the ability of DNA gyrase to wrap DNA and catalyze the supercoiling reaction.
    Kramlinger VM, Hiasa H.
    J Biol Chem; 2006 Feb 10; 281(6):3738-42. PubMed ID: 16332690
    [Abstract] [Full Text] [Related]

  • 14. ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA.
    Basu A, Schoeffler AJ, Berger JM, Bryant Z.
    Nat Struct Mol Biol; 2012 Apr 08; 19(5):538-46, S1. PubMed ID: 22484318
    [Abstract] [Full Text] [Related]

  • 15. Modulated control of DNA supercoiling balance by the DNA-wrapping domain of bacterial gyrase.
    Hobson MJ, Bryant Z, Berger JM.
    Nucleic Acids Res; 2020 Feb 28; 48(4):2035-2049. PubMed ID: 31950157
    [Abstract] [Full Text] [Related]

  • 16. Active-site residues of Escherichia coli DNA gyrase required in coupling ATP hydrolysis to DNA supercoiling and amino acid substitutions leading to novobiocin resistance.
    Gross CH, Parsons JD, Grossman TH, Charifson PS, Bellon S, Jernee J, Dwyer M, Chambers SP, Markland W, Botfield M, Raybuck SA.
    Antimicrob Agents Chemother; 2003 Mar 28; 47(3):1037-46. PubMed ID: 12604539
    [Abstract] [Full Text] [Related]

  • 17. E. coli Gyrase Fails to Negatively Supercoil Diaminopurine-Substituted DNA.
    Fernández-Sierra M, Shao Q, Fountain C, Finzi L, Dunlap D.
    J Mol Biol; 2015 Jul 03; 427(13):2305-18. PubMed ID: 25902201
    [Abstract] [Full Text] [Related]

  • 18. DNA supercoiling and relaxation by ATP-dependent DNA topoisomerases.
    Fisher LM, Austin CA, Hopewell R, Margerrison EE, Oram M, Patel S, Plummer K, Sng JH, Sreedharan S.
    Philos Trans R Soc Lond B Biol Sci; 1992 Apr 29; 336(1276):83-91. PubMed ID: 1351300
    [Abstract] [Full Text] [Related]

  • 19. Functional interactions between gyrase subunits are optimized in a species-specific manner.
    Weidlich D, Klostermeier D.
    J Biol Chem; 2020 Feb 21; 295(8):2299-2312. PubMed ID: 31953321
    [Abstract] [Full Text] [Related]

  • 20. Energy coupling in DNA gyrase and the mechanism of action of novobiocin.
    Sugino A, Higgins NP, Brown PO, Peebles CL, Cozzarelli NR.
    Proc Natl Acad Sci U S A; 1978 Oct 21; 75(10):4838-42. PubMed ID: 368801
    [Abstract] [Full Text] [Related]

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