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Journal Abstract Search

283 related items for PubMed ID: 29212440

  • 1. CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences.
    Gdanetz K, Benucci GMN, Vande Pol N, Bonito G.
    BMC Bioinformatics; 2017 Dec 06; 18(1):538. PubMed ID: 29212440
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  • 2. A bioinformatics pipeline for sequence-based analyses of fungal biodiversity.
    Taylor DL, Houston S.
    Methods Mol Biol; 2011 Dec 06; 722():141-55. PubMed ID: 21590418
    [Abstract] [Full Text] [Related]

  • 3. Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units.
    Glassman SI, Martiny JBH.
    mSphere; 2018 Jul 18; 3(4):. PubMed ID: 30021874
    [Abstract] [Full Text] [Related]

  • 4. CONSTAX2: improved taxonomic classification of environmental DNA markers.
    Liber JA, Bonito G, Benucci GMN.
    Bioinformatics; 2021 Nov 05; 37(21):3941-3943. PubMed ID: 33961008
    [Abstract] [Full Text] [Related]

  • 5. Clustering of fungal community internal transcribed spacer sequence data obscures taxonomic diversity.
    Yamamoto N, Bibby K.
    Environ Microbiol; 2014 Aug 05; 16(8):2491-500. PubMed ID: 24428124
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  • 6. Customization of a DADA2-based pipeline for fungal internal transcribed spacer 1 (ITS1) amplicon data sets.
    Rolling T, Zhai B, Frame J, Hohl TM, Taur Y.
    JCI Insight; 2022 Jan 11; 7(1):. PubMed ID: 34813499
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  • 8. Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses.
    Fouquier J, Rideout JR, Bolyen E, Chase J, Shiffer A, McDonald D, Knight R, Caporaso JG, Kelley ST.
    Microbiome; 2016 Feb 24; 4():11. PubMed ID: 26905735
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  • 10. The gut mycobiome of the Human Microbiome Project healthy cohort.
    Nash AK, Auchtung TA, Wong MC, Smith DP, Gesell JR, Ross MC, Stewart CJ, Metcalf GA, Muzny DM, Gibbs RA, Ajami NJ, Petrosino JF.
    Microbiome; 2017 Nov 25; 5(1):153. PubMed ID: 29178920
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  • 13. Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.
    Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Gregory Caporaso J.
    Microbiome; 2018 May 17; 6(1):90. PubMed ID: 29773078
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  • 15. IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences.
    Murali A, Bhargava A, Wright ES.
    Microbiome; 2018 Aug 09; 6(1):140. PubMed ID: 30092815
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  • 17. Investigation of the fungal community structures of imported wheat using high-throughput sequencing technology.
    Shi Y, Cheng Y, Wang Y, Zhang G, Gao R, Xiang C, Feng J, Lou D, Liu Y.
    PLoS One; 2017 Aug 09; 12(2):e0171894. PubMed ID: 28241020
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  • 18. Ignored sediment fungal populations in water supply reservoirs are revealed by quantitative PCR and 454 pyrosequencing.
    Zhang H, Huang T, Chen S.
    BMC Microbiol; 2015 Feb 22; 15():44. PubMed ID: 25886005
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