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315 related items for PubMed ID: 29243556

  • 1. Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.
    Sonawane KD, Kamble AS, Fandilolu PM.
    J Biomol Struct Dyn; 2018 Dec; 36(16):4182-4196. PubMed ID: 29243556
    [Abstract] [Full Text] [Related]

  • 2. The role of modifications in codon discrimination by tRNA(Lys)UUU.
    Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF.
    Nat Struct Mol Biol; 2004 Dec; 11(12):1186-91. PubMed ID: 15558052
    [Abstract] [Full Text] [Related]

  • 3. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 4. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
    Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13390-5. PubMed ID: 11063576
    [Abstract] [Full Text] [Related]

  • 5. Idiosyncratic recognition of UUG/UUA codons by modified nucleoside 5-taurinomethyluridine, τm5U present at 'wobble' position in anticodon loop of tRNALeu: A molecular modeling approach.
    Kamble AS, Fandilolu PM, Sambhare SB, Sonawane KD.
    PLoS One; 2017 Nov 07; 12(4):e0176756. PubMed ID: 28453549
    [Abstract] [Full Text] [Related]

  • 6. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.
    Vendeix FA, Murphy FV, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.
    J Mol Biol; 2012 Mar 02; 416(4):467-85. PubMed ID: 22227389
    [Abstract] [Full Text] [Related]

  • 7. Chemical synthesis of the 5-taurinomethyl(-2-thio)uridine modified anticodon arm of the human mitochondrial tRNA(Leu(UUR)) and tRNA(Lys).
    Leszczynska G, Leonczak P, Wozniak K, Malkiewicz A.
    RNA; 2014 Jun 02; 20(6):938-47. PubMed ID: 24757169
    [Abstract] [Full Text] [Related]

  • 8. Physical Chemistry of a Single tRNA-Modified Nucleoside Regulates Decoding of the Synonymous Lysine Wobble Codon and Affects Type 2 Diabetes.
    Vangaveti S, Ranganathan SV, Agris PF.
    J Phys Chem B; 2022 Feb 17; 126(6):1168-1177. PubMed ID: 35119848
    [Abstract] [Full Text] [Related]

  • 9. Accurate translation of the genetic code depends on tRNA modified nucleosides.
    Yarian C, Townsend H, Czestkowski W, Sochacka E, Malkiewicz AJ, Guenther R, Miskiewicz A, Agris PF.
    J Biol Chem; 2002 May 10; 277(19):16391-5. PubMed ID: 11861649
    [Abstract] [Full Text] [Related]

  • 10. Unconventional structure of tRNA(Lys)SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1.
    Agris PF, Guenther R, Ingram PC, Basti MM, Stuart JW, Sochacka E, Malkiewicz A.
    RNA; 1997 Apr 10; 3(4):420-8. PubMed ID: 9085848
    [Abstract] [Full Text] [Related]

  • 11. Structural and mechanistic basis for enhanced translational efficiency by 2-thiouridine at the tRNA anticodon wobble position.
    Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ.
    J Mol Biol; 2013 Oct 23; 425(20):3888-906. PubMed ID: 23727144
    [Abstract] [Full Text] [Related]

  • 12. The influence of hypermodified nucleosides lysidine and t(6)A to recognize the AUA codon instead of AUG: a molecular dynamics simulation study.
    Sonawane KD, Sambhare SB.
    Integr Biol (Camb); 2015 Nov 23; 7(11):1387-95. PubMed ID: 26215455
    [Abstract] [Full Text] [Related]

  • 13. Conformational Preferences of Modified Nucleoside 5-Taurinomethyluridine, τm(5)U Occur at 'wobble' 34th Position in the Anticodon Loop of tRNA.
    Kamble AS, Kumbhar BV, Sambhare SB, Bavi RS, Sonawane KD.
    Cell Biochem Biophys; 2015 Apr 23; 71(3):1589-603. PubMed ID: 25388845
    [Abstract] [Full Text] [Related]

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  • 15. Conformational preferences and structural analysis of hypermodified nucleoside, peroxywybutosine (o2yW) found at 37th position in anticodon loop of tRNAPhe and its role in modulating UUC codon-anticodon interactions.
    Fandilolu PM, Kamble AS, Sambhare SB, Sonawane KD.
    Gene; 2018 Jan 30; 641():310-325. PubMed ID: 29107006
    [Abstract] [Full Text] [Related]

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  • 17. Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.
    Sundaram M, Durant PC, Davis DR.
    Biochemistry; 2000 Oct 17; 39(41):12575-84. PubMed ID: 11027137
    [Abstract] [Full Text] [Related]

  • 18. Structural features of tRNALys favored by anticodon nuclease as inferred from reactivities of anticodon stem and loop substrate analogs.
    Jiang Y, Blanga S, Amitsur M, Meidler R, Krivosheyev E, Sundaram M, Bajji AC, Davis DR, Kaufmann G.
    J Biol Chem; 2002 Feb 08; 277(6):3836-41. PubMed ID: 11723135
    [Abstract] [Full Text] [Related]

  • 19. Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA.
    Eshete M, Marchbank MT, Deutscher SL, Sproat B, Leszczynska G, Malkiewicz A, Agris PF.
    Protein J; 2007 Jan 08; 26(1):61-73. PubMed ID: 17237992
    [Abstract] [Full Text] [Related]

  • 20. A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.
    Vangaveti S, Cantara WA, Spears JL, DeMirci H, Murphy FV, Ranganathan SV, Sarachan KL, Agris PF.
    J Mol Biol; 2020 Feb 14; 432(4):913-929. PubMed ID: 31945376
    [Abstract] [Full Text] [Related]

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