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Journal Abstract Search

192 related items for PubMed ID: 29272107

  • 1. Structural Evidence of a Major Conformational Change Triggered by Substrate Binding in DapE Enzymes: Impact on the Catalytic Mechanism.
    Nocek B, Reidl C, Starus A, Heath T, Bienvenue D, Osipiuk J, Jedrzejczak R, Joachimiak A, Becker DP, Holz RC.
    Biochemistry; 2018 Feb 06; 57(5):574-584. PubMed ID: 29272107
    [Abstract] [Full Text] [Related]

  • 2. The dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae contains two active-site histidine residues.
    Gillner DM, Bienvenue DL, Nocek BP, Joachimiak A, Zachary V, Bennett B, Holz RC.
    J Biol Inorg Chem; 2009 Jan 06; 14(1):1-10. PubMed ID: 18712420
    [Abstract] [Full Text] [Related]

  • 3. Structural basis for catalysis by the mono- and dimetalated forms of the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase.
    Nocek BP, Gillner DM, Fan Y, Holz RC, Joachimiak A.
    J Mol Biol; 2010 Apr 02; 397(3):617-26. PubMed ID: 20138056
    [Abstract] [Full Text] [Related]

  • 4. Substrate specificity, metal binding properties, and spectroscopic characterization of the DapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae.
    Bienvenue DL, Gilner DM, Davis RS, Bennett B, Holz RC.
    Biochemistry; 2003 Sep 16; 42(36):10756-63. PubMed ID: 12962500
    [Abstract] [Full Text] [Related]

  • 5. Kinetic and spectroscopic characterization of the E134A- and E134D-altered dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae.
    Davis R, Bienvenue D, Swierczek SI, Gilner DM, Rajagopal L, Bennett B, Holz RC.
    J Biol Inorg Chem; 2006 Mar 16; 11(2):206-16. PubMed ID: 16421726
    [Abstract] [Full Text] [Related]

  • 6. Practical spectrophotometric assay for the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase, a potential antibiotic target.
    Heath TK, Lutz MR, Reidl CT, Guzman ER, Herbert CA, Nocek BP, Holz RC, Olsen KW, Ballicora MA, Becker DP.
    PLoS One; 2018 Mar 16; 13(4):e0196010. PubMed ID: 29698518
    [Abstract] [Full Text] [Related]

  • 7. The dimerization domain in DapE enzymes is required for catalysis.
    Nocek B, Starus A, Makowska-Grzyska M, Gutierrez B, Sanchez S, Jedrzejczak R, Mack JC, Olsen KW, Joachimiak A, Holz RC.
    PLoS One; 2014 Mar 16; 9(5):e93593. PubMed ID: 24806882
    [Abstract] [Full Text] [Related]

  • 8. Atomic-Resolution 1.3 Å Crystal Structure, Inhibition by Sulfate, and Molecular Dynamics of the Bacterial Enzyme DapE.
    Kochert M, Nocek BP, Habeeb Mohammad TS, Gild E, Lovato K, Heath TK, Holz RC, Olsen KW, Becker DP.
    Biochemistry; 2021 Mar 30; 60(12):908-917. PubMed ID: 33721990
    [Abstract] [Full Text] [Related]

  • 9. The dapE-encoded N-succinyl-l,l-diaminopimelic acid desuccinylase from Haemophilus influenzae is a dinuclear metallohydrolase.
    Cosper NJ, Bienvenue DL, Shokes JE, Gilner DM, Tsukamoto T, Scott RA, Holz RC.
    J Am Chem Soc; 2003 Dec 03; 125(48):14654-5. PubMed ID: 14640610
    [Abstract] [Full Text] [Related]

  • 10. Hydrolysis of N-succinyl-L,L-diaminopimelic acid by the Haemophilus influenzae dapE-encoded desuccinylase: metal activation, solvent isotope effects, and kinetic mechanism.
    Born TL, Zheng R, Blanchard JS.
    Biochemistry; 1998 Jul 21; 37(29):10478-87. PubMed ID: 9671518
    [Abstract] [Full Text] [Related]

  • 11. Inhibition of the dapE-Encoded N-Succinyl-L,L-diaminopimelic Acid Desuccinylase from Neisseria meningitidis by L-Captopril.
    Starus A, Nocek B, Bennett B, Larrabee JA, Shaw DL, Sae-Lee W, Russo MT, Gillner DM, Makowska-Grzyska M, Joachimiak A, Holz RC.
    Biochemistry; 2015 Aug 11; 54(31):4834-44. PubMed ID: 26186504
    [Abstract] [Full Text] [Related]

  • 12. The structural and energetic aspects of substrate binding and the mechanism of action of the DapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) investigated using a hybrid QM/MM method.
    Dutta D, Mishra S.
    Phys Chem Chem Phys; 2014 Dec 21; 16(47):26348-58. PubMed ID: 25367594
    [Abstract] [Full Text] [Related]

  • 13. The three-dimensional structure of DapE from Enterococcus faecium reveals new insights into DapE/ArgE subfamily ligand specificity.
    Terrazas-López M, González-Segura L, Díaz-Vilchis A, Aguirre-Mendez KA, Lobo-Galo N, Martínez-Martínez A, Díaz-Sánchez ÁG.
    Int J Biol Macromol; 2024 Jun 21; 270(Pt 2):132281. PubMed ID: 38740150
    [Abstract] [Full Text] [Related]

  • 14. Inhibitors of bacterial N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) and demonstration of in vitro antimicrobial activity.
    Gillner D, Armoush N, Holz RC, Becker DP.
    Bioorg Med Chem Lett; 2009 Nov 15; 19(22):6350-2. PubMed ID: 19822427
    [Abstract] [Full Text] [Related]

  • 15. Analysis of the structural determinants underlying discrimination between substrate and solvent in beta-phosphoglucomutase catalysis.
    Dai J, Finci L, Zhang C, Lahiri S, Zhang G, Peisach E, Allen KN, Dunaway-Mariano D.
    Biochemistry; 2009 Mar 10; 48(9):1984-95. PubMed ID: 19154134
    [Abstract] [Full Text] [Related]

  • 16. Tetrazole-based inhibitors of the bacterial enzyme N-succinyl-l,l-2,6-diaminopimelic acid desuccinylase as potential antibiotics.
    DiPuma T, Thabthimthong T, Kelley EH, Konczak K, Beulke M, Herbert C, S Habeeb Mohammad T, Starus A, Nocek B, Olsen KW, Holz RC, Becker DP.
    Bioorg Med Chem Lett; 2023 Mar 01; 83():129177. PubMed ID: 36764468
    [Abstract] [Full Text] [Related]

  • 17. Reconstruction of diaminopimelic acid biosynthesis allows characterisation of Mycobacterium tuberculosis N-succinyl-L,L-diaminopimelic acid desuccinylase.
    Usha V, Lloyd AJ, Roper DI, Dowson CG, Kozlov G, Gehring K, Chauhan S, Imam HT, Blindauer CA, Besra GS.
    Sci Rep; 2016 Mar 15; 6():23191. PubMed ID: 26976706
    [Abstract] [Full Text] [Related]

  • 18. Structure of recombinant Haemophilus influenzae e (P4) acid phosphatase reveals a new member of the haloacid dehalogenase superfamily.
    Felts RL, Ou Z, Reilly TJ, Tanner JJ.
    Biochemistry; 2007 Oct 02; 46(39):11110-9. PubMed ID: 17824671
    [Abstract] [Full Text] [Related]

  • 19. Loss of Catalytic Activity in the E134D, H67A, and H349A Mutants of DapE: Mechanistic Analysis with QM/MM Investigation.
    Dutta D, Mishra S.
    J Phys Chem B; 2016 Nov 17; 120(45):11654-11664. PubMed ID: 27783518
    [Abstract] [Full Text] [Related]

  • 20. The bacterial meta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the α/β-hydrolase superfamily.
    Kuatsjah E, Chan ACK, Kobylarz MJ, Murphy MEP, Eltis LD.
    J Biol Chem; 2017 Nov 03; 292(44):18290-18302. PubMed ID: 28935670
    [Abstract] [Full Text] [Related]

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