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Journal Abstract Search

484 related items for PubMed ID: 29277864

  • 1.
    ; . PubMed ID:
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  • 2. Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.
    Wattam AR, Davis JJ, Assaf R, Boisvert S, Brettin T, Bun C, Conrad N, Dietrich EM, Disz T, Gabbard JL, Gerdes S, Henry CS, Kenyon RW, Machi D, Mao C, Nordberg EK, Olsen GJ, Murphy-Olson DE, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Vonstein V, Warren A, Xia F, Yoo H, Stevens RL.
    Nucleic Acids Res; 2017 Jan 04; 45(D1):D535-D542. PubMed ID: 27899627
    [Abstract] [Full Text] [Related]

  • 3. Comparative genomic analysis at the PATRIC, a bioinformatic resource center.
    Wattam AR, Gabbard JL, Shukla M, Sobral BW.
    Methods Mol Biol; 2014 Jan 04; 1197():287-308. PubMed ID: 25172288
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  • 5. PATRIC as a unique resource for studying antimicrobial resistance.
    Antonopoulos DA, Assaf R, Aziz RK, Brettin T, Bun C, Conrad N, Davis JJ, Dietrich EM, Disz T, Gerdes S, Kenyon RW, Machi D, Mao C, Murphy-Olson DE, Nordberg EK, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Santerre J, Shukla M, Stevens RL, VanOeffelen M, Vonstein V, Warren AS, Wattam AR, Xia F, Yoo H.
    Brief Bioinform; 2019 Jul 19; 20(4):1094-1102. PubMed ID: 28968762
    [Abstract] [Full Text] [Related]

  • 6. Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.
    Olson RD, Assaf R, Brettin T, Conrad N, Cucinell C, Davis JJ, Dempsey DM, Dickerman A, Dietrich EM, Kenyon RW, Kuscuoglu M, Lefkowitz EJ, Lu J, Machi D, Macken C, Mao C, Niewiadomska A, Nguyen M, Olsen GJ, Overbeek JC, Parrello B, Parrello V, Porter JS, Pusch GD, Shukla M, Singh I, Stewart L, Tan G, Thomas C, VanOeffelen M, Vonstein V, Wallace ZS, Warren AS, Wattam AR, Xia F, Yoo H, Zhang Y, Zmasek CM, Scheuermann RH, Stevens RL.
    Nucleic Acids Res; 2023 Jan 06; 51(D1):D678-D689. PubMed ID: 36350631
    [Abstract] [Full Text] [Related]

  • 7. Using KBase to Assemble and Annotate Prokaryotic Genomes.
    Allen B, Drake M, Harris N, Sullivan T.
    Curr Protoc Microbiol; 2017 Aug 11; 46():1E.13.1-1E.13.18. PubMed ID: 28800158
    [Abstract] [Full Text] [Related]

  • 8.
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  • 9. Bacterial Genomic Data Analysis in the Next-Generation Sequencing Era.
    Orsini M, Cuccuru G, Uva P, Fotia G.
    Methods Mol Biol; 2016 Aug 11; 1415():407-22. PubMed ID: 27115645
    [Abstract] [Full Text] [Related]

  • 10. MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
    Médigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z, Vallenet D.
    Brief Bioinform; 2019 Jul 19; 20(4):1071-1084. PubMed ID: 28968784
    [Abstract] [Full Text] [Related]

  • 11. PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species.
    Gillespie JJ, Wattam AR, Cammer SA, Gabbard JL, Shukla MP, Dalay O, Driscoll T, Hix D, Mane SP, Mao C, Nordberg EK, Scott M, Schulman JR, Snyder EE, Sullivan DE, Wang C, Warren A, Williams KP, Xue T, Yoo HS, Zhang C, Zhang Y, Will R, Kenyon RW, Sobral BW.
    Infect Immun; 2011 Nov 19; 79(11):4286-98. PubMed ID: 21896772
    [Abstract] [Full Text] [Related]

  • 12. Curation, integration and visualization of bacterial virulence factors in PATRIC.
    Mao C, Abraham D, Wattam AR, Wilson MJ, Shukla M, Yoo HS, Sobral BW.
    Bioinformatics; 2015 Jan 15; 31(2):252-8. PubMed ID: 25273106
    [Abstract] [Full Text] [Related]

  • 13. The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.
    Davis JJ, Wattam AR, Aziz RK, Brettin T, Butler R, Butler RM, Chlenski P, Conrad N, Dickerman A, Dietrich EM, Gabbard JL, Gerdes S, Guard A, Kenyon RW, Machi D, Mao C, Murphy-Olson D, Nguyen M, Nordberg EK, Olsen GJ, Olson RD, Overbeek JC, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomas C, VanOeffelen M, Vonstein V, Warren AS, Xia F, Xie D, Yoo H, Stevens R.
    Nucleic Acids Res; 2020 Jan 08; 48(D1):D606-D612. PubMed ID: 31667520
    [Abstract] [Full Text] [Related]

  • 14. Annotation, comparison and databases for hundreds of bacterial genomes.
    Médigue C, Moszer I.
    Res Microbiol; 2007 Dec 08; 158(10):724-36. PubMed ID: 18031997
    [Abstract] [Full Text] [Related]

  • 15. PATRIC: the VBI PathoSystems Resource Integration Center.
    Snyder EE, Kampanya N, Lu J, Nordberg EK, Karur HR, Shukla M, Soneja J, Tian Y, Xue T, Yoo H, Zhang F, Dharmanolla C, Dongre NV, Gillespie JJ, Hamelius J, Hance M, Huntington KI, Jukneliene D, Koziski J, Mackasmiel L, Mane SP, Nguyen V, Purkayastha A, Shallom J, Yu G, Guo Y, Gabbard J, Hix D, Azad AF, Baker SC, Boyle SM, Khudyakov Y, Meng XJ, Rupprecht C, Vinje J, Crasta OR, Czar MJ, Dickerman A, Eckart JD, Kenyon R, Will R, Setubal JC, Sobral BW.
    Nucleic Acids Res; 2007 Jan 08; 35(Database issue):D401-6. PubMed ID: 17142235
    [Abstract] [Full Text] [Related]

  • 16. The bioinformatics resource for oral pathogens.
    Chen T, Abbey K, Deng WJ, Cheng MC.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W734-40. PubMed ID: 15980574
    [Abstract] [Full Text] [Related]

  • 17. MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation.
    Lugli GA, Milani C, Mancabelli L, van Sinderen D, Ventura M.
    FEMS Microbiol Lett; 2016 Apr 01; 363(7):. PubMed ID: 26936607
    [Abstract] [Full Text] [Related]

  • 18. IonGAP: integrative bacterial genome analysis for Ion Torrent sequence data.
    Baez-Ortega A, Lorenzo-Diaz F, Hernandez M, Gonzalez-Vila CI, Roda-Garcia JL, Colebrook M, Flores C.
    Bioinformatics; 2015 Sep 01; 31(17):2870-3. PubMed ID: 25953799
    [Abstract] [Full Text] [Related]

  • 19. Beav: a bacterial genome and mobile element annotation pipeline.
    Jung JM, Rahman A, Schiffer AM, Weisberg AJ.
    mSphere; 2024 Aug 28; 9(8):e0020924. PubMed ID: 39037262
    [Abstract] [Full Text] [Related]

  • 20. The MicrobesOnline Web site for comparative genomics.
    Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP.
    Genome Res; 2005 Jul 28; 15(7):1015-22. PubMed ID: 15998914
    [Abstract] [Full Text] [Related]

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